PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019163663.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GATA
Protein Properties Length: 139aa    MW: 15090.2 Da    PI: 10.3388
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019163663.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.32.1e-182256135
            GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                    Cs C+tt TplWR gp g+k+LCnaCG++y kk++
  XP_019163663.1 22 CSDCHTTRTPLWRGGPAGPKSLCNACGIKYNKKRR 56
                    ********************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    
MDLNEQMGSK EPDSPSPQVK SCSDCHTTRT PLWRGGPAGP KSLCNACGIK YNKKRRQMLG  60
LDRGRNEKGK KRRKSGGGGG DGAVSSGGST ETAKSLRMRW MALEGETALR RSEKLLSQLR  120
EEEQAAILLM ALSYGSVYA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15374KKRRQMLGLDRGRNEKGKKRRK
25475KKRRQMLGLDRGRNEKGKKRRK
37074KKRRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.12e-26GATA family protein