PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019163470.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 639aa MW: 71911.9 Da PI: 6.9034

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019163470.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	41.8	3.6e-13	57	137	20	90
FAR1 20 kkskrngeitkrtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++++r+g ++k +vCs+eg+++ + + + +r+r+++r+gC+a+l++k+ +dg+++v+ +e+ HnH l+ XP_019163470.1 57 YRQNREGVVVKDLLVCSREGFKQAVQGSvvidaasdqaPVAPKRRRVSNRVGCRAMLVLKMVDDGVFVVHFIEHRHNHCLC 137 67789999***************999**9998888999********************************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 639 aa Download sequence
MAFAFYIGFE ARSESLQGCV MDVSPDGTKF WTPSCDEAVR LFEGQTFLSL AHGIDFYRQN 60 REGVVVKDLL VCSREGFKQA VQGSVVIDAA SDQAPVAPKR RRVSNRVGCR AMLVLKMVDD 120 GVFVVHFIEH RHNHCLCSDV AKPFLRDAHI VVKKYVKKVG DCPDYVFRYD VDSQDQLCRA 180 FWADPIAKEN FSAFGEVVSF DATYGTNRYG MVLVPFTGVD NHKRGVTFAM GLISREDVDS 240 YVWLLQQFKS AMGCVPSCTI TDQDPSMRVA VPQVFDTTRH RFCMWHIMSK VSEKVGNVLS 300 KDEEFRRALN DVAWCETLSV EEFERGWQDV IEKYSLGDHR WFCLMYELRS YWILVYFNDI 360 FIGGLLRMTS RSEAANSVFG SCTNQHASLF ELFNNFEGAI DAQRLAQAKL NAECEGHFPL 420 CQIPLLIEKH AAAVYTVNVF YDVQAEVIAG SFSCRSVRSN VEGMVTWYEV QDGDELVFKD 480 RRVVSIPSRY LIARWTMGAC VRQVLGVQCG GASEVDVAIG EAWADFFSCV TMASRSVDHV 540 SKLNAALKDF NAFLLAENGP SVRSSSSKKQ LFESFCGASP DGQVDVRPPP ISNNKGGGKR 600 YKSTRELAIE KSGHRQRQCQ TCEKYGHNSR TCPMRNVDV

Sequence ? help Back to Top

Protein Sequence Length: 639 aa Download sequence

MAFAFYIGFE ARSESLQGCV MDVSPDGTKF WTPSCDEAVR LFEGQTFLSL AHGIDFYRQN  60
REGVVVKDLL VCSREGFKQA VQGSVVIDAA SDQAPVAPKR RRVSNRVGCR AMLVLKMVDD  120
GVFVVHFIEH RHNHCLCSDV AKPFLRDAHI VVKKYVKKVG DCPDYVFRYD VDSQDQLCRA  180
FWADPIAKEN FSAFGEVVSF DATYGTNRYG MVLVPFTGVD NHKRGVTFAM GLISREDVDS  240
YVWLLQQFKS AMGCVPSCTI TDQDPSMRVA VPQVFDTTRH RFCMWHIMSK VSEKVGNVLS  300
KDEEFRRALN DVAWCETLSV EEFERGWQDV IEKYSLGDHR WFCLMYELRS YWILVYFNDI  360
FIGGLLRMTS RSEAANSVFG SCTNQHASLF ELFNNFEGAI DAQRLAQAKL NAECEGHFPL  420
CQIPLLIEKH AAAVYTVNVF YDVQAEVIAG SFSCRSVRSN VEGMVTWYEV QDGDELVFKD  480
RRVVSIPSRY LIARWTMGAC VRQVLGVQCG GASEVDVAIG EAWADFFSCV TMASRSVDHV  540
SKLNAALKDF NAFLLAENGP SVRSSSSKKQ LFESFCGASP DGQVDVRPPP ISNNKGGGKR  600
YKSTRELAIE KSGHRQRQCQ TCEKYGHNSR TCPMRNVDV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	99	103	KRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-63	FAR1 family protein