PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019163442.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 734aa MW: 83188.8 Da PI: 8.3643

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019163442.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	69.4	8.6e-22	46	140	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fYn+YA+ +GF+vr+s+ kk+k n i ++++vCs+eg+++ +k++ +k++r+r+++r+gC ak++ k + g++ vt++e+ H H l XP_019163442.1 46 EFYNNYASVAGFDVRRSSDKKNKYNI-ILRKKLVCSREGFKAGKKSDppetviGKKTKRRRPSNRVGCMAKIVFKIDGAGRYLVTTFEEGHAHCL 139 6***************99997776.************9999*999999*********************************99 PP FAR1 90 a 90 + XP_019163442.1 140 C 140 8 PP

Sequence ? help Back to Top
Protein Sequence Length: 734 aa Download sequence
MGGDVDEEYC YMNISPSGTK IWLTACDTSI KPFVGQLFAT LDEGVEFYNN YASVAGFDVR 60 RSSDKKNKYN IILRKKLVCS REGFKAGKKS DPPETVIGKK TKRRRPSNRV GCMAKIVFKI 120 DGAGRYLVTT FEEGHAHCLC DDSYKPFLKV NRKLDVGHQQ FITNCAKVNV GSSKSFKIYA 180 EVVGGTENVG ATQQDFKNYR QEVLAYMHGG DCQMVISKYL DIKADYPDMY FEYEANHNDQ 240 LIRIFWSDGV ARKHYSAFGD VVSFDATYKT NRYGIVFVPF IGIDNHKKCV TFGAALIDRE 300 DVDSYIWVLK NFKNAMGSPP AITVIDQDPA MKVAIAHEFP ETRHRYCMWH IMTKVGDKVG 360 TDLARNEEFR RELNTVVWND ASTTANFEHA WKAVMEKYAI TENSWLKHMY DERASWVPAC 420 FEGVFMGGLL RTTSRSEAEN RIFRSNTNKH LCLTEFFIRF ESKVRKQRIT HAHLSGASNA 480 QTPPFKTPLG IERHASELYT LTVFYDVQEE IIAGCFECRV RAVTIGDGIK TYEVDDKRGT 540 QYGLTVENVT MITHCPCRMY TRIGLLCRHT FAVLIYERVD TIPPQQITPR WTRNAITEYE 600 DELRKYGYGG ATTGNEAGDV INTFYRCLGI AKGDSLKLQQ MCSVLSDMET TWCGHEEVQV 660 DAASGKQAIM ESYCGVPAPE TITVHQPPVT SNKGSGKRMR SAKELAMKEQ NRKKRTCKTC 720 GMADGHNSRS CPQK

Sequence ? help Back to Top

Protein Sequence Length: 734 aa Download sequence

MGGDVDEEYC YMNISPSGTK IWLTACDTSI KPFVGQLFAT LDEGVEFYNN YASVAGFDVR  60
RSSDKKNKYN IILRKKLVCS REGFKAGKKS DPPETVIGKK TKRRRPSNRV GCMAKIVFKI  120
DGAGRYLVTT FEEGHAHCLC DDSYKPFLKV NRKLDVGHQQ FITNCAKVNV GSSKSFKIYA  180
EVVGGTENVG ATQQDFKNYR QEVLAYMHGG DCQMVISKYL DIKADYPDMY FEYEANHNDQ  240
LIRIFWSDGV ARKHYSAFGD VVSFDATYKT NRYGIVFVPF IGIDNHKKCV TFGAALIDRE  300
DVDSYIWVLK NFKNAMGSPP AITVIDQDPA MKVAIAHEFP ETRHRYCMWH IMTKVGDKVG  360
TDLARNEEFR RELNTVVWND ASTTANFEHA WKAVMEKYAI TENSWLKHMY DERASWVPAC  420
FEGVFMGGLL RTTSRSEAEN RIFRSNTNKH LCLTEFFIRF ESKVRKQRIT HAHLSGASNA  480
QTPPFKTPLG IERHASELYT LTVFYDVQEE IIAGCFECRV RAVTIGDGIK TYEVDDKRGT  540
QYGLTVENVT MITHCPCRMY TRIGLLCRHT FAVLIYERVD TIPPQQITPR WTRNAITEYE  600
DELRKYGYGG ATTGNEAGDV INTFYRCLGI AKGDSLKLQQ MCSVLSDMET TWCGHEEVQV  660
DAASGKQAIM ESYCGVPAPE TITVHQPPVT SNKGSGKRMR SAKELAMKEQ NRKKRTCKTC  720
GMADGHNSRS CPQK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	7e-90	FAR1 family protein