PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019163334.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

E2F/DP

Protein Properties

Length: 444aa MW: 49540.6 Da PI: 4.6377

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019163334.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	86.1	2.6e-27	122	187	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 r+++sL+llt+kf++l++++e+gi++ln++a++L +v ++RRiYDi+NVLe+++liekk kn+i+wkg XP_019163334.1 122 RYDSSLGLLTKKFINLIRHAEDGILDLNKAADTL---EV--QKRRIYDITNVLEGIGLIEKKLKNRIQWKG 187 6899****************************...99..**************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 444 aa Download sequence
MQQDLKPQQL PFMVVKPPSG DFRRFSADHP RPSPAQEPDD IIVNTPPLKW KTDMVSYNQV 60 PIDQDPSFGC AVNSPMQTPA SGKAKKAQRV PRTSKSRRYV SQNAADDGSP SGNNVTPVGS 120 CRYDSSLGLL TKKFINLIRH AEDGILDLNK AADTLEVQKR RIYDITNVLE GIGLIEKKLK 180 NRIQWKGLDV SRTRDFDGVS NLQAEVEKLM LEERRIDEEI REMQDRLRDL SEDENNKGWL 240 FVTEEDIKGL PCFQNGTLLA IKAPHGTTLE VPDPDEAVDY PQRRYRVILR STMGPIDVYL 300 VSQFEKKLEE MNAVDVAPSI HSTSGANENA TAMVETEESR GNEVLQEKET ERVSSNVGTS 360 QDFTSGIMKI VPDVDNEADY WLLSDVDVSI TDMWTTEPKV NWSALNLVHE DYTMANISTP 420 RAQTPPVAAE TPSAANTAVS LPAV

Sequence ? help Back to Top

Protein Sequence Length: 444 aa Download sequence

MQQDLKPQQL PFMVVKPPSG DFRRFSADHP RPSPAQEPDD IIVNTPPLKW KTDMVSYNQV  60
PIDQDPSFGC AVNSPMQTPA SGKAKKAQRV PRTSKSRRYV SQNAADDGSP SGNNVTPVGS  120
CRYDSSLGLL TKKFINLIRH AEDGILDLNK AADTLEVQKR RIYDITNVLE GIGLIEKKLK  180
NRIQWKGLDV SRTRDFDGVS NLQAEVEKLM LEERRIDEEI REMQDRLRDL SEDENNKGWL  240
FVTEEDIKGL PCFQNGTLLA IKAPHGTTLE VPDPDEAVDY PQRRYRVILR STMGPIDVYL  300
VSQFEKKLEE MNAVDVAPSI HSTSGANENA TAMVETEESR GNEVLQEKET ERVSSNVGTS  360
QDFTSGIMKI VPDVDNEADY WLLSDVDVSI TDMWTTEPKV NWSALNLVHE DYTMANISTP  420
RAQTPPVAAE TPSAANTAVS LPAV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22220.2	1e-128	E2F/DP family protein