PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019163320.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 385aa    MW: 41748.6 Da    PI: 8.6316
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019163320.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.71.8e-12322367655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri +++ +L+el+P+     +k  + a++L +Av+YIk+L+
  XP_019163320.1 322 SIAERVRRTRISDRMRKLQELVPNM----DKQTNTADMLDLAVDYIKDLE 367
                     689*********************7....688***************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    
MDQTRCQQQQ MSSCLTRFRS APSSYFDTIL NAAPTPPPAN SGGGYARDDN MLSAGGSGPN  60
IQQAFARLIA TMGGARDSSS CSSGGGSDAK PPLVPPPKQE PEARLQPRQE MKYSSHSQPF  120
SGGDNSYGLM SPVNPGCFAP VKMNTGVSNS NLTRFNSSPA GFFDQFNIKS GTNAAEASFA  180
SPNVFKNRVD LSPRHPPSRG MASISETGAS AVKEEACSGD GVGGFNEDQT MDESYLSSFP  240
IPSWDDLDLL SDDFLKVTDE KPSLKAKAPD FKNTEGSRSR PPGRLSHHLS LPKSSEELSS  300
ILQDSVPCRV RAKRGCATHP RSIAERVRRT RISDRMRKLQ ELVPNMDKQT NTADMLDLAV  360
DYIKDLEQKV KRLADNRAKC RCSNK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.18e-45bHLH family protein