PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019163315.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

NAC

Protein Properties

Length: 425aa MW: 48174 Da PI: 7.5262

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019163315.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	158.1	3.6e-49	51	177	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 + pGfrF+Ptdeel+++yLkkkve+ + ++ evi+ev+i ++ePwdLp k+v ++++ew+fFs+ +ky++g++++rat+sgyWkatgk+++v+s XP_019163315.1 51 MFPGFRFSPTDEELISYYLKKKVEALDERV-EVIPEVEIWRHEPWDLPgKSVVQSDNEWFFFSPCGRKYPNGSQSRRATESGYWKATGKERNVKS 144 579**********************999.99***********878888999********************************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++++g+k+tLvf+ grapkg++t+W+mhey + XP_019163315.1 145 -GSKVIGTKRTLVFHVGRAPKGQRTQWIMHEYCI 177 .9****************************75 PP

Sequence ? help Back to Top
Protein Sequence Length: 425 aa Download sequence
MADGGDISLS RQNEEDNSME RISGRNNNNN NNNSDETNGK IEISLATASS MFPGFRFSPT 60 DEELISYYLK KKVEALDERV EVIPEVEIWR HEPWDLPGKS VVQSDNEWFF FSPCGRKYPN 120 GSQSRRATES GYWKATGKER NVKSGSKVIG TKRTLVFHVG RAPKGQRTQW IMHEYCIGEK 180 EYQDSMVVCR LRKNNEFHLN DTLGNSRNKS IVNTSNNAFS ELEYTGGLGG LNAGDSCSKE 240 CSSSLNSHSV EQIDPGFDCD LVNEISQCGS SSHHKDDGNA EDWFADIMRD DIIKLDDTSL 300 NASLDVLSVS NKKPGLDIKP KQPSQGLMPH VLPFQGTANR RLRLRRDRVA FFETSWNEAY 360 EIKNANIHPQ KISRSDKKQF SRRFISLRLK SLSIYIVLVS LVLLFLFLSS LEGSYPVKWF 420 RGFLL

Sequence ? help Back to Top

Protein Sequence Length: 425 aa Download sequence

MADGGDISLS RQNEEDNSME RISGRNNNNN NNNSDETNGK IEISLATASS MFPGFRFSPT  60
DEELISYYLK KKVEALDERV EVIPEVEIWR HEPWDLPGKS VVQSDNEWFF FSPCGRKYPN  120
GSQSRRATES GYWKATGKER NVKSGSKVIG TKRTLVFHVG RAPKGQRTQW IMHEYCIGEK  180
EYQDSMVVCR LRKNNEFHLN DTLGNSRNKS IVNTSNNAFS ELEYTGGLGG LNAGDSCSKE  240
CSSSLNSHSV EQIDPGFDCD LVNEISQCGS SSHHKDDGNA EDWFADIMRD DIIKLDDTSL  300
NASLDVLSVS NKKPGLDIKP KQPSQGLMPH VLPFQGTANR RLRLRRDRVA FFETSWNEAY  360
EIKNANIHPQ KISRSDKKQF SRRFISLRLK SLSIYIVLVS LVLLFLFLSS LEGSYPVKWF  420
RGFLL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	340	347	RRLRLRRD
2	343	348	RLRRDR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44290.1	2e-83	NAC family protein