PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_019163166.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 256aa MW: 29375.8 Da PI: 7.1169 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.8 | 5.3e-18 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd ll+++++++G g+W++ a+t g++R++k+c++rw +yl XP_019163166.1 16 RGPWTEEEDGLLIHYIALHGQGRWNLLAKTAGLRRSGKSCRLRWVNYL 63 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.9 | 1.7e-16 | 69 | 112 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T eE++l+++++ +lG++ W++Ia++++ gRt++++k++w++ XP_019163166.1 69 RGNLTLEEQLLILELHLKLGNR-WSKIAEHLP-GRTDNEIKNYWRT 112 7899******************.*********.***********96 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 256 aa Download sequence |
MQLSSQSSTS DDDLRRGPWT EEEDGLLIHY IALHGQGRWN LLAKTAGLRR SGKSCRLRWV 60 NYLKPDVKRG NLTLEEQLLI LELHLKLGNR WSKIAEHLPG RTDNEIKNYW RTRVQKQARN 120 LNLHSNTAAF QQLIRHFWVP TLLHKIHARS IQPQPQTTTS YQEKKPHYNS SHQPLTNSNT 180 TTESTYFSPL SPLSDECPSI NNPFHGYYGM EAFSPPLFTG SGDCFIDYDQ VGEGNSSMDD 240 FSVDSSLWSM DEIWVG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G25340.1 | 9e-59 | MYB family protein |