PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019163047.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 731aa MW: 82874.5 Da PI: 8.1796

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019163047.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	25.3	5e-08	88	133	1	47
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk 47 +fY +YA vGF+vr + kk r g ++ r++ C++eg+++ k + XP_019163047.1 88 EFYIKYAALVGFDVRLGSLKKD-RGGVVVLRHLLCNREGYKQFMKVN 133 6**************99998.8999**********99876655 PP

Sequence ? help Back to Top
Protein Sequence Length: 731 aa Download sequence
MASWLLPIVS LISPSVIDVQ RGSDLGWRLV FHFTSTAQYG LAGNITGVDE GCRLEISPGS 60 SKYWWPQCDD GSKPVIGQTF RTLTEGEEFY IKYAALVGFD VRLGSLKKDR GGVVVLRHLL 120 CNREGYKQFM KVNRKLDFGH QAFMVNCAKA NVGTSQGVRI LKEFVGGYEN VGATSVDFQN 180 SKRDLRAYID GCDAQYFLDK LSRKNDKCAA FYYKHDIDEN DQLRRVFWAD PVARRNHTVF 240 GDIVSFDATY STNRYKMVFV PFTGVDNHKR CVTFGAALIT KEDVASYVWV LECYKGAMGD 300 APSCFVTDQD PAMRIALEQV YPGSRHRFCM WHIMMKVGEK VGPELAKDTV FRGRLNDVVW 360 DEIQQPDVFE TRWQALLGEY GLLDHNWFTQ LWEARRYWIP AYFKDMLLCG LVRTTSRSEG 420 ENSFFGRYLT HTASLVEFYS HFESAVDAQR QIHTTLNAVC EGHFAPTKTD LKMERHALAL 480 YTVTIFHEVQ AEIYAGCYSC GVVSVELAGD IINYGIKDGD KQQHQVHYNS TDNSAMCTCS 540 LFQRLGWLCR HIFIVFKNNN VDNIPSRYIV DRWTRKVCLR AEFQIDGLTI HSNVNDDESK 600 TQENRMWAEI FACVGLAINS SERVERLTQV IHQLKDSFEG ETNCPVNHKK NNPMIQAYCG 660 SVPSLAVTVK PPIVAKNKGS GKRIKGKREK AIEQSLKGVR KCHGCGKYGG HNSRTCEVLR 720 ATRMGVGVEG L

Sequence ? help Back to Top

Protein Sequence Length: 731 aa Download sequence

MASWLLPIVS LISPSVIDVQ RGSDLGWRLV FHFTSTAQYG LAGNITGVDE GCRLEISPGS  60
SKYWWPQCDD GSKPVIGQTF RTLTEGEEFY IKYAALVGFD VRLGSLKKDR GGVVVLRHLL  120
CNREGYKQFM KVNRKLDFGH QAFMVNCAKA NVGTSQGVRI LKEFVGGYEN VGATSVDFQN  180
SKRDLRAYID GCDAQYFLDK LSRKNDKCAA FYYKHDIDEN DQLRRVFWAD PVARRNHTVF  240
GDIVSFDATY STNRYKMVFV PFTGVDNHKR CVTFGAALIT KEDVASYVWV LECYKGAMGD  300
APSCFVTDQD PAMRIALEQV YPGSRHRFCM WHIMMKVGEK VGPELAKDTV FRGRLNDVVW  360
DEIQQPDVFE TRWQALLGEY GLLDHNWFTQ LWEARRYWIP AYFKDMLLCG LVRTTSRSEG  420
ENSFFGRYLT HTASLVEFYS HFESAVDAQR QIHTTLNAVC EGHFAPTKTD LKMERHALAL  480
YTVTIFHEVQ AEIYAGCYSC GVVSVELAGD IINYGIKDGD KQQHQVHYNS TDNSAMCTCS  540
LFQRLGWLCR HIFIVFKNNN VDNIPSRYIV DRWTRKVCLR AEFQIDGLTI HSNVNDDESK  600
TQENRMWAEI FACVGLAINS SERVERLTQV IHQLKDSFEG ETNCPVNHKK NNPMIQAYCG  660
SVPSLAVTVK PPIVAKNKGS GKRIKGKREK AIEQSLKGVR KCHGCGKYGG HNSRTCEVLR  720
ATRMGVGVEG L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-79	FAR1 family protein