PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019162995.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 518aa    MW: 57821.7 Da    PI: 6.124
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019162995.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS452.52.8e-1381465181374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l+++L++cA+avs++dl  aq+l+++l+e++s +g+p+qRl ay++e+L arla s+s++yk+l+++e +   s e l+++++++ev+P++kf++
  XP_019162995.1 146 LKQVLIACAKAVSDNDLLTAQWLMSELREMVSVSGEPIQRLGAYMLEGLVARLAASGSSIYKSLRCKEPT---SFELLSYMHILYEVCPYFKFGY 237
                     5799*****************************************************************9...9********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     + aN aI ea++ e+rvHiiDf+i qG QW++L+qa+a+Rp+gpp++RiTg+++++ +  +   l+ +g+rL+k+Ae+++vpfef++ +a   +d
  XP_019162995.1 238 MSANGAIAEAMKDENRVHIIDFQIAQGSQWITLIQAFAARPGGPPHIRITGIDDSSLShaHGGGLSLVGKRLSKLAESFKVPFEFHA-AAIPGND 331
                     ******************************************************877678999************************.7778888 PP

            GRAS 189 lelee..LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                     ++le+  ++++pgEalaVn++++lh+++desvs++++rde+L+lvksl+Pkvv++veqe+++n++ F+ rfle+l+yy+a+f+s++++lpr+++e
  XP_019162995.1 332 VQLENpgIQIQPGEALAVNFAYMLHHIPDESVSTQNHRDELLRLVKSLNPKVVTLVEQESNTNTSAFFPRFLETLDYYTAMFESIDVTLPRDHKE 426
                     8777645999************************************************************************************* PP

            GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     ri+vE+++l+r++vn+vaceg er+erhe l+kW +r+++aGF+p+pls+ +++++k ll+ ++++ yr+ee++g+l+lgW++r Lv+ +aW+
  XP_019162995.1 427 RINVEQHCLARDVVNIVACEGIERVERHELLGKWMSRFRMAGFSPYPLSSVVNATIKKLLESYSEK-YRLEERNGALYLGWMNRDLVASCAWK 518
                     ****************************************************************65.*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    
MQAAQRLRRT GMSNVLCYPP VQKADPYELS YNNTNVANPV HASRNLYCTL ESSSVSESRA  60
LYGSPMSQQG SRSYPSDNNY GSPISGSCIT DDMSSFIHKL KELETAMLGP DSDVLESHDN  120
TFPSSIASPE IDSWRQMMEA IPRGDLKQVL IACAKAVSDN DLLTAQWLMS ELREMVSVSG  180
EPIQRLGAYM LEGLVARLAA SGSSIYKSLR CKEPTSFELL SYMHILYEVC PYFKFGYMSA  240
NGAIAEAMKD ENRVHIIDFQ IAQGSQWITL IQAFAARPGG PPHIRITGID DSSLSHAHGG  300
GLSLVGKRLS KLAESFKVPF EFHAAAIPGN DVQLENPGIQ IQPGEALAVN FAYMLHHIPD  360
ESVSTQNHRD ELLRLVKSLN PKVVTLVEQE SNTNTSAFFP RFLETLDYYT AMFESIDVTL  420
PRDHKERINV EQHCLARDVV NIVACEGIER VERHELLGKW MSRFRMAGFS PYPLSSVVNA  480
TIKKLLESYS EKYRLEERNG ALYLGWMNRD LVASCAWK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.10.0GRAS family protein