PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019162992.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NAC
Protein Properties Length: 285aa    MW: 32088.8 Da    PI: 9.2794
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019162992.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM106.53.2e-33441841128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......sg 81 
                     lp+G++F+P+d+e++ e+L++k  +++      ++++   i+   +i++++P++Lp  v+++ +  +fF++ +++y+tg+rk+r+++      + 
  XP_019162992.1  44 LPAGVKFDPSDQEIL-EHLQAKSVSDSrklhplIDEFIPtIEGEnGICYTHPEKLP-GVNKDGQVRHFFHRPSRAYTTGTRKRRKVHtdadggET 136
                     799************.677777555553776553333333665557**********.667777888******************74445655577 PP

             NAM  82 yWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                     +W++tgk+++v+  + +l g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  XP_019162992.1 137 RWHKTGKTRAVFG-EANLRGYKKILVLYtnYGRQRKPEKTNWVMHQYHL 184
                     8************.999***********66589**************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    
MTWCNNSAAV ATSKFDSRIR SVTCPSCGHS IQLESQGIHD LPGLPAGVKF DPSDQEILEH  60
LQAKSVSDSR KLHPLIDEFI PTIEGENGIC YTHPEKLPGV NKDGQVRHFF HRPSRAYTTG  120
TRKRRKVHTD ADGGETRWHK TGKTRAVFGE ANLRGYKKIL VLYTNYGRQR KPEKTNWVMH  180
QYHLGQDEEE KDGELVVSKV FYQTQPRQCG SSSSSTSKQP LNKTSVSFSR RDNSFVDYYN  240
PPFISSYHVG TQNPDAQPHQ LIPSLVVHAD TSSFINLSSN SSKDK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-118NAC family protein