PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019162938.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | C2H2 | ||||||||
Protein Properties | Length: 247aa MW: 28181.6 Da PI: 8.484 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.8 | 8.3e-05 | 48 | 70 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H XP_019162938.1 48 YTCNFCRREFRSAQALGGHMNVH 70 9********************99 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence |
MEQTRYWVWP KPKLDLSSSY GGDSWEEQAF AEDAAGALGG CVWPPRSYTC NFCRREFRSA 60 QALGGHMNVH RRDRARLKHS PPSHNGDLSV PTTNNPRRPL LTQASTFLYN PSSDRRILAP 120 NLGSETCFHL RDDDGVNGET KKKKKNYSRI LEDLEKNINC DEDDERLRMS KSIRCRAEGE 180 YDMADLSGSF RKRRRIDDSL FGCDPKPCLV ERCGGGLRRP QPERIHSSIE QELDLELRLG 240 SSPPKVK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 191 | 195 | RKRRR |
2 | 192 | 196 | KRRRI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06070.1 | 3e-28 | C2H2 family protein |