PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019162860.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | LBD | ||||||||
Protein Properties | Length: 247aa MW: 25936.8 Da PI: 7.8788 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 132.7 | 1.5e-41 | 48 | 147 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv k+l ++pe +r da++slvyeA++r+rdPvyG++g i++lqqq++ l+ael+ XP_019162860.1 48 PCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVAKMLLEVPEGQRADAANSLVYEANVRLRDPVYGCMGAISALQQQIQFLQAELN 142 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_019162860.1 143 AVRAE 147 *9987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence |
MERVDEIIGR KLLKTEIEAA SLSPEMVMAG RRQGLGPAAG MTLNTITPCA ACKLLRRRCA 60 EECPFSPYFS PHEPHKFAAV HKVFGASNVA KMLLEVPEGQ RADAANSLVY EANVRLRDPV 120 YGCMGAISAL QQQIQFLQAE LNAVRAELLR HKYREAAAAA ANSIITSAPS AAAALAAGAV 180 SVVELPQAPP TPTPPPPPPP PSVLVVSSSS SSSSTSPPSS APSSLYTPAS TVASFGTIQT 240 INMPFFD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30340.1 | 4e-73 | LBD family protein |