PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019162745.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 782aa    MW: 84282.1 Da    PI: 6.2775
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019162745.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS414.31.1e-1264177762374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      +lLl+cAeav++++l +a+++L ++sel++p+g++ qR+aayf eA++arl++s+ ++y++ p ++ + +  ++ ++a+++f+ +sP++kfsh+
  XP_019162745.1 417 LTLLLQCAEAVAADNLDEANRMLLQVSELSTPYGTSAQRVAAYFSEAMSARLVNSCLGIYASAPLNALPLSLNQKMASAFQVFNGISPFVKFSHF 511
                     579*****************************************************************9999*********************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                     taNqaI ea+e+e+rvHiiD+di+qGlQWp L++ LasRp+gpp +R+Tg+g     s e+le+tg+rL++fA++lg+pfef + va+++ +l++
  XP_019162745.1 512 TANQAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPLVRLTGLGT----SMEALEATGKRLSDFAQKLGLPFEFFP-VADKVGNLDP 601
                     *****************************************************....***************************.7********* PP

            GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                     ++L+v+++Ea+aV++    h+l+d ++s ++    +L+l+++l Pkvv+vveq+++h ++sFl rf+ea++yysalfdsl a +++eseer+ vE
  XP_019162745.1 602 QRLNVNKREAVAVHWLQ--HSLYDVTGSDTN----TLWLLQRLAPKVVTVVEQDLSH-AGSFLGRFVEAIHYYSALFDSLGACYGEESEERHAVE 689
                     ****************9..999999999999....**********************.899********************************** PP

            GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     ++ll+rei+nv+a  g +r  + + +++Wre+++++GF+ v+l  +aa+qa lll +++sdgy++ e++g+l lgWkd  L+++SaWr
  XP_019162745.1 690 QQLLSREIRNVLAVGGPSRSGEVK-FNNWREKFQQSGFRGVSLAGNAAAQATLLLGMFHSDGYTLAEDNGALKLGWKDLCLLTASAWR 776
                     ******************888776.**************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 782 aa     Download sequence    
MAAKAFPMVG DAANVSGGAT SSREYHLNDS HHNILPLHSS SSSASPSSHL ALLCDNAKMV  60
RKRAASEMEL QIGGGISEHG RFLRRNAPLL GDLRVCGTNF GGGAGGDNGG GNSLSVSVSH  120
PNHVVVNNYS TMQIAPPPTS TNLSVTSTSD ATHLAYMEQL PPNEPQPPLP LCVFSGLPLF  180
PAPSRARNAA GAALQPAPLP VTASGSAIGV NSSSAGGMAD NGTAMAWIDG IIKDLIHIST  240
HVSIPQLIQN VREIIHPCNP NLAALLEYRL RSLTTAAAAD PLAANVYDDW RRKETLQPQS  300
QDAITHPLHL PDSMTPPPWE ITLPPAAAAA ITRHQLRDNN PASLPFVPVP SSDRQDQQQQ  360
PGRMDNEKQP ESQSQSQSPP ASENTAAAAL IRTESIMRRE KEELEQQKKD EEGLHLLTLL  420
LQCAEAVAAD NLDEANRMLL QVSELSTPYG TSAQRVAAYF SEAMSARLVN SCLGIYASAP  480
LNALPLSLNQ KMASAFQVFN GISPFVKFSH FTANQAIQEA FEREDRVHII DLDIMQGLQW  540
PGLFHILASR PGGPPLVRLT GLGTSMEALE ATGKRLSDFA QKLGLPFEFF PVADKVGNLD  600
PQRLNVNKRE AVAVHWLQHS LYDVTGSDTN TLWLLQRLAP KVVTVVEQDL SHAGSFLGRF  660
VEAIHYYSAL FDSLGACYGE ESEERHAVEQ QLLSREIRNV LAVGGPSRSG EVKFNNWREK  720
FQQSGFRGVS LAGNAAAQAT LLLGMFHSDG YTLAEDNGAL KLGWKDLCLL TASAWRPPPL  780
AQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein