PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019162529.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

CO-like

Protein Properties

Length: 408aa MW: 44778.3 Da PI: 4.91

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019162529.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	20.4	1e-06	4	44	5	39
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +C+ ++e++ +++C+++ lC +C + H+ H++ XP_019162529.1 4 ICEFCGEQRSIIYCRSDAASLCLSCDRNVHSAnalsrrHSR 44 7*****************************65677777765 PP
2	zf-B_box	25.8	2.3e-08	46	88	4	40
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +C++++++++ C++ + lC++C +H++ H+++ XP_019162529.1 46 LVCERCNSQPAVVRCTEERISLCQNCDWMGHSNsstgstHKRQ 88 68*****************************888999999876 PP
3	CCT	61.4	2.9e-21	351	392	1	42
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvk 42 R a+lRYkeK+ktR+F+K++rY+sRKa+A+ R RvKGrFvk XP_019162529.1 351 RTDAVLRYKEKKKTRQFDKRVRYASRKARADVRRRVKGRFVK 392 8899*************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence
MGYICEFCGE QRSIIYCRSD AASLCLSCDR NVHSANALSR RHSRTLVCER CNSQPAVVRC 60 TEERISLCQN CDWMGHSNSS TGSTHKRQAV SCYSGCPSAA ELSSIWSFLL DFPSVGDSTC 120 EQGMGSMSIT DNHRRDNNQG TEGKNSSRDL STIAEESDEP TANLSTNWMG SSMGTLDKKL 180 HNIELPTVST HPTSPKVCYP GTEDPSIYED NSFYGDFNMD EVDLSIENYE ELFGMSLNDP 240 EHLFENQGID GLFETEDMSG ANAIEGSSIG RANANQPACS NAASADSVMS CKTEPNLCFA 300 RQGQSNISFS NITGESSGGD YQDCGASSML LMGEPPWGPS GPENSLPSSS RTDAVLRYKE 360 KKKTRQFDKR VRYASRKARA DVRRRVKGRF VKPGDAYDYD PLSQTRSC

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence

MGYICEFCGE QRSIIYCRSD AASLCLSCDR NVHSANALSR RHSRTLVCER CNSQPAVVRC  60
TEERISLCQN CDWMGHSNSS TGSTHKRQAV SCYSGCPSAA ELSSIWSFLL DFPSVGDSTC  120
EQGMGSMSIT DNHRRDNNQG TEGKNSSRDL STIAEESDEP TANLSTNWMG SSMGTLDKKL  180
HNIELPTVST HPTSPKVCYP GTEDPSIYED NSFYGDFNMD EVDLSIENYE ELFGMSLNDP  240
EHLFENQGID GLFETEDMSG ANAIEGSSIG RANANQPACS NAASADSVMS CKTEPNLCFA  300
RQGQSNISFS NITGESSGGD YQDCGASSML LMGEPPWGPS GPENSLPSSS RTDAVLRYKE  360
KKKTRQFDKR VRYASRKARA DVRRRVKGRF VKPGDAYDYD PLSQTRSC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48250.1	1e-131	CO-like family protein