PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019162406.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Protein Properties

Length: 868aa MW: 95185.6 Da PI: 7.7866

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019162406.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	59.8	4.8e-19	336	435	1	99
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+k l+ sd++k grlvlpkk+ae++ ++++e+ l+++d++g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ e++ XP_019162406.1 336 FEKMLSASDAGKIGRLVLPKKCAEAYfpPISHPEGLPLKVQDLKGQEWLFQFRFwpNNNSRMYVLE-GVTPCMQSMQLQAGDIVTFSRIE-PEGK 428 89************************555666777***********99899999999.*******************887.5554 PP .EEEEE-S CS B3 92 lvvkvfrk 99 lv+ +rk XP_019162406.1 429 LVM-GCRK 435 555.5544 PP

Sequence ? help Back to Top
Protein Sequence Length: 868 aa Download sequence
MSSSSTQPSN VCFNSNCKEV SELPRKGWRR RTGEFADLCD RCASAYEEGK FCETFHLNAS 60 GWRSCESCGK QIHCGCIVSF HTFVLLDAGG IECITCARKS FILTPNPAWP PPSDFLPLQP 120 EGIKDSRSWT PIAGSGPVPW RQAPSLFNGS VIQTKLQPKT PYGDITGSID RLHLNERPPV 180 SSLVNKRKEE NFGSLLNRTL KSCVSGRLEN EHTGFSCSEQ SNSFLSGTQQ TSLSKIDFSA 240 PNFRLTVSST PKKEASDRSK VFATHIQPTT LSPSVGKQSC SQNGTDSSGE AQMRNVRSRG 300 DGGGKHQLLP RYWPRITDQE LQQISGDTNS VITPLFEKML SASDAGKIGR LVLPKKCAEA 360 YFPPISHPEG LPLKVQDLKG QEWLFQFRFW PNNNSRMYVL EGVTPCMQSM QLQAGDIVTF 420 SRIEPEGKLV MGCRKSSSTP SAHQGYGTSN SPIGVPTNGN ASTKNIKPGE IVTKCSIKAK 480 EVVETKPPVR SKRKNSTSNS KSKRLKVDCE ELIELKLTVV QAQQLMRPSP NDTPTVIVIE 540 GCDFEEYEDA PIIGRPTIPS TGSLGEKIQW VQCEDCFKWR KIPDDALLPG RWTCSENLWD 600 PDRSVCSAVE ELTVECLADL VPTIGKAPKK MKASKQDMNS PDTIEGLDAL ANLAIQEEGE 660 GVLASSSQAT TKHPRHRPGC TCIVCIQPPS GKGPKHKQQC DCNVCKSVKR RFKTLMMKKG 720 KKLSEKEAEA AANVNSPCSD AGAFSPTHEE PNSESCLDDT NDIIEKKSSP SPIKGEIDLN 780 IKPEREDLSP RCDSGGVMRF LQDAAERFIW QQRGLPSSFA NGNPVGHEVQ DHVNLNNCGS 840 DGSHQTSDAD RHMALSIDNV SSVVHAEK

Sequence ? help Back to Top

Protein Sequence Length: 868 aa Download sequence

MSSSSTQPSN VCFNSNCKEV SELPRKGWRR RTGEFADLCD RCASAYEEGK FCETFHLNAS  60
GWRSCESCGK QIHCGCIVSF HTFVLLDAGG IECITCARKS FILTPNPAWP PPSDFLPLQP  120
EGIKDSRSWT PIAGSGPVPW RQAPSLFNGS VIQTKLQPKT PYGDITGSID RLHLNERPPV  180
SSLVNKRKEE NFGSLLNRTL KSCVSGRLEN EHTGFSCSEQ SNSFLSGTQQ TSLSKIDFSA  240
PNFRLTVSST PKKEASDRSK VFATHIQPTT LSPSVGKQSC SQNGTDSSGE AQMRNVRSRG  300
DGGGKHQLLP RYWPRITDQE LQQISGDTNS VITPLFEKML SASDAGKIGR LVLPKKCAEA  360
YFPPISHPEG LPLKVQDLKG QEWLFQFRFW PNNNSRMYVL EGVTPCMQSM QLQAGDIVTF  420
SRIEPEGKLV MGCRKSSSTP SAHQGYGTSN SPIGVPTNGN ASTKNIKPGE IVTKCSIKAK  480
EVVETKPPVR SKRKNSTSNS KSKRLKVDCE ELIELKLTVV QAQQLMRPSP NDTPTVIVIE  540
GCDFEEYEDA PIIGRPTIPS TGSLGEKIQW VQCEDCFKWR KIPDDALLPG RWTCSENLWD  600
PDRSVCSAVE ELTVECLADL VPTIGKAPKK MKASKQDMNS PDTIEGLDAL ANLAIQEEGE  660
GVLASSSQAT TKHPRHRPGC TCIVCIQPPS GKGPKHKQQC DCNVCKSVKR RFKTLMMKKG  720
KKLSEKEAEA AANVNSPCSD AGAFSPTHEE PNSESCLDDT NDIIEKKSSP SPIKGEIDLN  780
IKPEREDLSP RCDSGGVMRF LQDAAERFIW QQRGLPSSFA NGNPVGHEVQ DHVNLNNCGS  840
DGSHQTSDAD RHMALSIDNV SSVVHAEK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	492	506	KRKNSTSNSKSKRLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	1e-171	B3 family protein