PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019162230.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 323aa    MW: 36992 Da    PI: 7.82
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019162230.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR151.43.6e-1653148190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                     +fY +YA ++GF+v +s+ +k+k  +   kr +vCs+eg++  +  +       +k++r+r++ r+gC a++  k+   g++ev+ +e+e +H+l
  XP_019162230.1  53 DFYIKYAANAGFDVWRSSDEKNKYGTILRKRLMVCSREGFKGLTGITactiegPKKQKRRRTTYRVGCWARIAFKLGIGGRFEVKGFEEEQTHSL 147
                     6*********************99999999999*********9998899999989999999*********************************9 PP

            FAR1  90 a 90 
                     +
  XP_019162230.1 148 C 148
                     8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    
MSNTTDNFEK NAEERDCATE VPPGSTVVWI PECDPCLKPF EGQVFETLDD GIDFYIKYAA  60
NAGFDVWRSS DEKNKYGTIL RKRLMVCSRE GFKGLTGITA CTIEGPKKQK RRRTTYRVGC  120
WARIAFKLGI GGRFEVKGFE EEQTHSLCKD RYKPFMKVNR KLDIGHQQFI TNCLKVNIGA  180
SQSFDLYAEM VGGVANVGAT KQDFKNYKRE MLEFMREGDA QMVISKYLAK KADDTNMFFE  240
YEMNEQDNLA RLFWADGVAR KNYVAFGDVV SFDATYQTNR YKLVFVPFTG VDNHKRCVTF  300
GAGLIDREDV ESYRWCNAPC YGP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106112PKKQKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-41FAR1 family protein