PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019162195.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 801aa MW: 91431.5 Da PI: 7.9704

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019162195.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.8	3.2e-22	93	180	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 Yn+YA ++GFsvrk k+++ + +++i++++f C k+g+++++kk+ +++ +r+ trtgC+a + + ++g+ vtk +++HnHel+p XP_019162195.1 93 LYNDYAFRLGFSVRKGKQYYVSGSQTIKMKKFHCAKSGFKDNKKKD--SRSYSRVDTRTGCNAFCQFDLASNGQLIVTKHVKDHNHELCP 180 7***************************************9999..9999**********************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 801 aa Download sequence
MNNINDSNNR VDAIQVDDDI TKDVNALIHV EPISPIDVES IPVDGTSGGA TDESSPIGVQ 60 ASSSNAMDES SSIPVTQELL GITVTSIEEA FNLYNDYAFR LGFSVRKGKQ YYVSGSQTIK 120 MKKFHCAKSG FKDNKKKDSR SYSRVDTRTG CNAFCQFDLA SNGQLIVTKH VKDHNHELCP 180 PSNSYLLRSH RSVVDTQLDY LKNLKRSGVA LSDGIRFLKH QSGGSPLVGF TPRDAYNSLH 240 TDSIKRLDGT DSNSLIEIFR QRQSNEPDFF FDFELDEDAR LCNFFWRDTR MKEDFVLFGD 300 LVVHDTTYRT NKYDMICGPF VGMNHHCMNI MFGCGFLLNE RTDSFVWLFK TFLRAMGGKC 360 PQTIMTDQCA AMSAAISLVF PSARHRLCIW HIGENSKKHI KCLRSQNGFM ELFNFLLKYT 420 DTEAEFEFYW NRLVTNYNCH KNVWLNKLYD IREKWCSAFN KDYFSGGILS SQRSETTNHS 480 ISKRLSKTSG LSDFYNSFVN VVSEWRSKEN GEDVRCSQGL PTMALDHVKL LLHARNVYTI 540 EAYYLFEQQF LKGAACHQES VASNVDELKY HIWRPDIDII RHEVCFNIKD MNICCTCKFF 600 SEMGILCSHC LRILNIHCVE KIPEKYICRR WTKKVVEHRI MDIASSSSIL TVASPIWVID 660 MGRKWQRLVL SSQDNCKARQ VCENLIEDGR RRIEGEVGPI CFDDLERSMR SNAIQNPERS 720 GVKGDRNRRP VSTVQKKYNQ ASGRKNYAKR VESNTKAAVQ SSMQEVVSNI VGSGYLVHPN 780 DTTSSELICV RSKSQNNSND N

Sequence ? help Back to Top

Protein Sequence Length: 801 aa Download sequence

MNNINDSNNR VDAIQVDDDI TKDVNALIHV EPISPIDVES IPVDGTSGGA TDESSPIGVQ  60
ASSSNAMDES SSIPVTQELL GITVTSIEEA FNLYNDYAFR LGFSVRKGKQ YYVSGSQTIK  120
MKKFHCAKSG FKDNKKKDSR SYSRVDTRTG CNAFCQFDLA SNGQLIVTKH VKDHNHELCP  180
PSNSYLLRSH RSVVDTQLDY LKNLKRSGVA LSDGIRFLKH QSGGSPLVGF TPRDAYNSLH  240
TDSIKRLDGT DSNSLIEIFR QRQSNEPDFF FDFELDEDAR LCNFFWRDTR MKEDFVLFGD  300
LVVHDTTYRT NKYDMICGPF VGMNHHCMNI MFGCGFLLNE RTDSFVWLFK TFLRAMGGKC  360
PQTIMTDQCA AMSAAISLVF PSARHRLCIW HIGENSKKHI KCLRSQNGFM ELFNFLLKYT  420
DTEAEFEFYW NRLVTNYNCH KNVWLNKLYD IREKWCSAFN KDYFSGGILS SQRSETTNHS  480
ISKRLSKTSG LSDFYNSFVN VVSEWRSKEN GEDVRCSQGL PTMALDHVKL LLHARNVYTI  540
EAYYLFEQQF LKGAACHQES VASNVDELKY HIWRPDIDII RHEVCFNIKD MNICCTCKFF  600
SEMGILCSHC LRILNIHCVE KIPEKYICRR WTKKVVEHRI MDIASSSSIL TVASPIWVID  660
MGRKWQRLVL SSQDNCKARQ VCENLIEDGR RRIEGEVGPI CFDDLERSMR SNAIQNPERS  720
GVKGDRNRRP VSTVQKKYNQ ASGRKNYAKR VESNTKAAVQ SSMQEVVSNI VGSGYLVHPN  780
DTTSSELICV RSKSQNNSND N

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-89	FAR1 family protein