PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019161923.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 426aa MW: 46702.5 Da PI: 9.0745

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019161923.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.5	1.2e-05	69	91	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_019161923.1 69 FVCEICNKGFQRDQNLQLHRRGH 91 89*******************88 PP
2	zf-C2H2	12.1	0.00058	146	168	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H + + XP_019161923.1 146 WKCDKCSKRYAVQSDWKAHSKIC 168 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence
MIKAVQLVDD SMSNLTSASN DNAISISSTQ QPSNTNQAVK RKRNQAGNPD PEAEVVALSP 60 NTLFATNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLKQR NKDEVVKRKV YVCPEASCVH 120 HDPARALGDL TGIKKHYSRK HGEKKWKCDK CSKRYAVQSD WKAHSKICGT REYRCDCGTL 180 FSRRDSFITH RAFCDALAEE SAIRSSSLTP LPNALFSTQP PPPLSATATS LQALQNLQAT 240 FNHLRQPAEI PPWLACPPPP PPPTLKATGP TQLLENPNNP STLLVSPPHM SATALLQKAA 300 QLGVTSNNTI NSTGSLIRPH HHHQNQIHHM MGTAAAGFFS SREEELASSY GTNKPAAGHA 360 SLTPGCMEMM GTTGSDTSGF YYHHQGFNGG RENTDIEGLN TRDFLSLTAS FSSSKGFSQN 420 SACWPP

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence

MIKAVQLVDD SMSNLTSASN DNAISISSTQ QPSNTNQAVK RKRNQAGNPD PEAEVVALSP  60
NTLFATNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLKQR NKDEVVKRKV YVCPEASCVH  120
HDPARALGDL TGIKKHYSRK HGEKKWKCDK CSKRYAVQSD WKAHSKICGT REYRCDCGTL  180
FSRRDSFITH RAFCDALAEE SAIRSSSLTP LPNALFSTQP PPPLSATATS LQALQNLQAT  240
FNHLRQPAEI PPWLACPPPP PPPTLKATGP TQLLENPNNP STLLVSPPHM SATALLQKAA  300
QLGVTSNNTI NSTGSLIRPH HHHQNQIHHM MGTAAAGFFS SREEELASSY GTNKPAAGHA  360
SLTPGCMEMM GTTGSDTSGF YYHHQGFNGG RENTDIEGLN TRDFLSLTAS FSSSKGFSQN  420
SACWPP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45260.1	1e-109	C2H2 family protein