PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019161401.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 485aa MW: 53359.1 Da PI: 8.9051

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019161401.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.3	1.4e-05	93	115	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_019161401.1 93 FVCEICNKGFQRDQNLQLHRRGH 115 89*******************88 PP
2	zf-C2H2	12.2	0.00054	169	191	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ XP_019161401.1 169 WKCEKCSKFYAVQSDWKAHSKTC 191 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 485 aa Download sequence
MLQEFKHQTH LLLNKYQNTS SSSSSPSSLS LQAAMFPSDQ ELSVSAFNPM LHSAIQDEQP 60 QKMKKKRNLP GNPDPEAEVI ALSPKTLMAT NRFVCEICNK GFQRDQNLQL HRRGHNLPWK 120 LKQRSNKENR KRVYVCPEPT CVHHHPSRAL GDLTGIKKHF CRKHGEKKWK CEKCSKFYAV 180 QSDWKAHSKT CGTREYRCDC GTLFSRKDSF ITHRAFCDAL AEESARLSAN SILLMHPTST 240 ASLTTGAPPN TAQMQPSFHL NPSSLFPNAA VQHHQPPQRH FANPPSPIMS GGHISLSSPW 300 DAPPSQNPNH NHPLPMIKTE SMSVPPYFQE APPPLPPLMA SGSAVLSATA LLQKAASIGA 360 TVGHVNSSMA QLDRGTVGHV NMKMASQDYL GFGTWQKGDP LTRDFLGLTA DHGSTTANGS 420 GRDHDHHHHR LLSYAAAGGG VDELFPSSST NNGMYNDGDN SLFKHHQLSF GFAAAETASE 480 TWGNC

Sequence ? help Back to Top

Protein Sequence Length: 485 aa Download sequence

MLQEFKHQTH LLLNKYQNTS SSSSSPSSLS LQAAMFPSDQ ELSVSAFNPM LHSAIQDEQP  60
QKMKKKRNLP GNPDPEAEVI ALSPKTLMAT NRFVCEICNK GFQRDQNLQL HRRGHNLPWK  120
LKQRSNKENR KRVYVCPEPT CVHHHPSRAL GDLTGIKKHF CRKHGEKKWK CEKCSKFYAV  180
QSDWKAHSKT CGTREYRCDC GTLFSRKDSF ITHRAFCDAL AEESARLSAN SILLMHPTST  240
ASLTTGAPPN TAQMQPSFHL NPSSLFPNAA VQHHQPPQRH FANPPSPIMS GGHISLSSPW  300
DAPPSQNPNH NHPLPMIKTE SMSVPPYFQE APPPLPPLMA SGSAVLSATA LLQKAASIGA  360
TVGHVNSSMA QLDRGTVGHV NMKMASQDYL GFGTWQKGDP LTRDFLGLTA DHGSTTANGS  420
GRDHDHHHHR LLSYAAAGGG VDELFPSSST NNGMYNDGDN SLFKHHQLSF GFAAAETASE  480
TWGNC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02670.1	1e-125	C2H2 family protein