PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019161359.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | LBD | ||||||||
Protein Properties | Length: 184aa MW: 20594.7 Da PI: 7.417 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 141.3 | 3e-44 | 12 | 110 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+C+++Cv+apyfp e+p+kfanvhk+FGasnv+kll+++++++reda++sl+yeAear++dPvyG+vg i+ lq+q+ +l++el+ XP_019161359.1 12 PCAACKFLRRRCQPGCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEIQPHQREDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVLRLQKELD 106 7*********************************************************************************************9 PP DUF260 96 llke 99 ++++ XP_019161359.1 107 ATNA 110 9876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence |
MSSSSSSYSN PPCAACKFLR RRCQPGCVFA PYFPPEEPQK FANVHKIFGA SNVSKLLNEI 60 QPHQREDAVN SLAYEAEARL KDPVYGCVGA ISVLQRQVLR LQKELDATNA DLMRYARNEM 120 SSCGHGYHPT PDDNNNMNSY QMYNQQRSSS SQYGRSVYGQ SYGMPNYSSQ WTNSSSGDHN 180 PEGD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27650.1 | 1e-67 | LBD family protein |