PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019161355.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

AP2

Protein Properties

Length: 413aa MW: 46820.9 Da PI: 5.5252

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019161355.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	46.2	1.1e-14	72	131	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpse.ng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d s+ n kr ++ +lg ++++e Aa+ ++ a++k++g XP_019161355.1 72 SLYRGVTRHRWTGRYEAHLWDKSIwNStqnKRgRQTYLGAYDSEEAAARTYDLAALKYWG 131 57*****************777777876558***********************98 PP
2	AP2	50.8	4.3e-16	174	225	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I +s +k+ +lg+f t eeAa a++ a+ +++g XP_019161355.1 174 SKYRGVARHHHNGRWEARIGRVSG---NKYLYLGTFSTQEEAATAYDMAAIEYRG 225 89**99******999754...5***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence
MMMKRFRLPS SSSSCSSSSS CIIGSGGTEI EVLPEPVKPI PQPEPRPKRP RTKRNQILNA 60 HSPTSGSTRR SSLYRGVTRH RWTGRYEAHL WDKSIWNSTQ NKRGRQTYLG AYDSEEAAAR 120 TYDLAALKYW GPGTTLNFPI ETYSKELEEM EKLSREEFLA SLRRRSSGFS RGVSKYRGVA 180 RHHHNGRWEA RIGRVSGNKY LYLGTFSTQE EAATAYDMAA IEYRGSNAVT NFDISVYADK 240 LKEIRERNER EQQGNDESSC EVESKEHKEE SPKWNQEEEY FVEEIVPKLE GMEHTKLPKL 300 EFAPSCSLPM MTPIDPLEEE PESFWNDSFP VHDLHLDEKP SYLLDFFNDS SIGNSLDFLF 360 EEPSSGSTLI SDEFEAMVNE GHNAAFTAPS PSSNSTTLSV YGEISAASKL LNC

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence

MMMKRFRLPS SSSSCSSSSS CIIGSGGTEI EVLPEPVKPI PQPEPRPKRP RTKRNQILNA  60
HSPTSGSTRR SSLYRGVTRH RWTGRYEAHL WDKSIWNSTQ NKRGRQTYLG AYDSEEAAAR  120
TYDLAALKYW GPGTTLNFPI ETYSKELEEM EKLSREEFLA SLRRRSSGFS RGVSKYRGVA  180
RHHHNGRWEA RIGRVSGNKY LYLGTFSTQE EAATAYDMAA IEYRGSNAVT NFDISVYADK  240
LKEIRERNER EQQGNDESSC EVESKEHKEE SPKWNQEEEY FVEEIVPKLE GMEHTKLPKL  300
EFAPSCSLPM MTPIDPLEEE PESFWNDSFP VHDLHLDEKP SYLLDFFNDS SIGNSLDFLF  360
EEPSSGSTLI SDEFEAMVNE GHNAAFTAPS PSSNSTTLSV YGEISAASKL LNC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54320.1	3e-83	AP2 family protein