PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019161350.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family B3
Protein Properties Length: 303aa    MW: 34222.2 Da    PI: 6.1786
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019161350.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.83.5e-17103203198
                     EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+l++sdv+ ++r+v+pkk ae++       +e++ +++ed +g  +W +k++y  +++s++yvl+ ++ +Fv+++ L  gD v F+ d+ ++
  XP_019161350.1 103 FDKELKNSDVGPLRRIVIPKKPAEDYlpkL-LVKEGFPISMEDMDGrHVWHFKFRYwpNNSSRMYVLE-NTGGFVNEHSLGLGDYVAFYIDE-QK 194
                     89**************************54.4457799*****999789******9888899999999.********************765.66 PP

                     E..EEEEE- CS
              B3  90 felvvkvfr 98 
                     +++v+ +++
  XP_019161350.1 195 QNYVIEARK 203
                     667777665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    
MEISEVSTER FSFLAMGLGG SNSPNNPPPP PPPPPVDHHF TTLHLATAFN AQLRKRMRSQ  60
RRRRSSLNFS PLRFHHSFHL PHVSPPPPPP PTAPDSSRFR FLFDKELKNS DVGPLRRIVI  120
PKKPAEDYLP KLLVKEGFPI SMEDMDGRHV WHFKFRYWPN NSSRMYVLEN TGGFVNEHSL  180
GLGDYVAFYI DEQKQNYVIE ARKAGDQGGC KAAEALTDYG QNDDVEAGVI QNQADASCYY  240
PQSFPRVDDM ETTSFVYDTT FSNELSPFDF VGGSITNYST IDPWSSFGSI ESLSIDDFYS  300
AAK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.15e-59B3 family protein