PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019161029.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 296aa MW: 33254.8 Da PI: 7.0072

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019161029.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.5	0.00043	5	27	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C +sF + L H+r+H XP_019161029.1 5 HKCKVCLRSFVNGKALGGHMRSH 27 79********************9 PP
2	zf-C2H2	12.7	0.00039	164	186	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k+F++ L H +H XP_019161029.1 164 YRCESCSKVFRSYQALGGHRASH 186 9***********99999998887 PP
3	zf-C2H2	12.9	0.00034	216	238	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C ++Fs+ L H r+H XP_019161029.1 216 HECPICYRVFSSGQALGGHKRSH 238 79******************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence
MENHHKCKVC LRSFVNGKAL GGHMRSHVIA RWSSSSSEEE EYEASQNEIE TAAGSVVVQD 60 GESETELCRE QVRPTTPRCR RSKRIRKSSS QIHGEREESE MKIQKTGITA TESSPPASSI 120 SEHTSPEEDV AYCLILLSKD KWTKGEEDEE EEENVKNKKA RGKYRCESCS KVFRSYQALG 180 GHRASHKKIK PNKRSHENAW EIDNNKEKEK EKEKIHECPI CYRVFSSGQA LGGHKRSHFT 240 ASARTSTVSS LHCSASTSTN EGNFIDLNLP ASLDDDDTIT QIELSALSDA CFLRPH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	1e-52	C2H2 family protein