PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019160841.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 449aa    MW: 48522 Da    PI: 5.2878
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019160841.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS371.79.8e-114874463374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                      lLl+cAe+v+ ++l  a++lL ++ el+sp g++ +R+aayf+e+L+ar+ +s  + y+ l+ ++ + ++s++ +aal+ ++ +sP++kfsh+t
  XP_019160841.1  87 GLLLQCAECVAMDNLDDASNLLPEIAELSSPFGSSAERVAAYFAEGLSARIISSYLGSYSPLTLKTLTLTHSQKLFAALQSYNSISPLVKFSHFT 181
                     58******************************************************************99************************* PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                     aNqaI +a++ge++vH+iD+di+qGlQWp L++ LasR+++  s++iTgvgs    s e le+tg+rLa+fA++lg+pfef++l  k  +  +++
  XP_019160841.1 182 ANQAIFQALDGEDHVHVIDLDIMQGLQWPGLFHILASRSRKIRSIKITGVGS----SIELLESTGRRLAEFATSLGLPFEFRPLEGKIGNITDPS 272
                     ****************************************************....9**************************988888888*** PP

            GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287
                     +L vk gE+++V++++  h l+d ++s       +L+l+  l+Pk++++veq+++h ++sFl rf+eal+yysalfd+l  +l+++s er++vE+
  XP_019160841.1 273 QLGVKIGETTVVHWMH--HCLYDVTGSDFG----TLRLLTLLRPKLITIVEQDLSH-GGSFLGRFVEALHYYSALFDALGDGLGADSVERHTVEQ 360
                     ***************9..888888888888....**********************.789*********************************** PP

            GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +l+g ei+n+va  g +r+ + + +e+W e l+++GF+pv+l  + a+qa lll +++++gy++ eesg+l lgWkd +L+++SaW+
  XP_019160841.1 361 QLFGCEIRNIVAVGGPKRTGEVK-VERWGEELKRVGFGPVSLAGSPAAQAGLLLGMFPWKGYTLVEESGCLKLGWKDLSLLTASAWQ 446
                     *****************998887.9*************************************************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    
MLQSLHFSPN PNNSNNCPNS PNLSSSMASK RSVIDLGGAA ATAEDSSFKR PRHLSSSGDP  60
SVSGEKGEEE EEEGVMDTES TGLRLLGLLL QCAECVAMDN LDDASNLLPE IAELSSPFGS  120
SAERVAAYFA EGLSARIISS YLGSYSPLTL KTLTLTHSQK LFAALQSYNS ISPLVKFSHF  180
TANQAIFQAL DGEDHVHVID LDIMQGLQWP GLFHILASRS RKIRSIKITG VGSSIELLES  240
TGRRLAEFAT SLGLPFEFRP LEGKIGNITD PSQLGVKIGE TTVVHWMHHC LYDVTGSDFG  300
TLRLLTLLRP KLITIVEQDL SHGGSFLGRF VEALHYYSAL FDALGDGLGA DSVERHTVEQ  360
QLFGCEIRNI VAVGGPKRTG EVKVERWGEE LKRVGFGPVS LAGSPAAQAG LLLGMFPWKG  420
YTLVEESGCL KLGWKDLSLL TASAWQPSD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.10.0GRAS family protein