PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019160818.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | C3H | ||||||||
Protein Properties | Length: 505aa MW: 56408.6 Da PI: 5.3556 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 30.2 | 7.9e-10 | 163 | 186 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 e C+++++tG Ck+G CkF+H++ XP_019160818.1 163 EDCSYYMKTGNCKFGFHCKFNHPR 186 89********************96 PP | |||||||
2 | zf-CCCH | 22 | 2.8e-07 | 211 | 233 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C+f++ + Ck+G +Ck++H++ XP_019160818.1 211 ECKFYLTSAGCKFGKSCKYNHSR 233 8********************95 PP | |||||||
3 | zf-CCCH | 41 | 3.2e-13 | 254 | 279 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C++++rtG CkyG++C+F+H++ XP_019160818.1 254 GEKECPYYMRTGSCKYGSNCRFHHPE 279 7899********************96 PP | |||||||
4 | zf-CCCH | 27.6 | 4.9e-09 | 390 | 416 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f +tG Cky ++CkF+H++ XP_019160818.1 390 PGQPECSYFIKTGDCKYKSNCKFHHPK 416 5789*********************96 PP | |||||||
5 | zf-CCCH | 38.3 | 2.2e-12 | 436 | 460 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++r+G+Ck+G++CkF H+ XP_019160818.1 436 DQAICSYYSRYGICKFGPNCKFDHP 460 6899********************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 505 aa Download sequence |
MEEQLQNQHQ SDAENQELGL ELQSLTNQSL SPDPNPQNPP QSPPLLSEDD DDDDDYDEKA 60 MRAISDELQD LVVTQAYLDR DRNQSYGGSE KSVGDDDGYG HAYGDHDGYD VYGDDDRSGG 120 WAESGDRGDR VFKEGDTGGG DDGFNASNGR KFVFHYPLRP DAEDCSYYMK TGNCKFGFHC 180 KFNHPRRKTQ WPKDKGTLKE ENQERGAVQT ECKFYLTSAG CKFGKSCKYN HSREKVPASP 240 IQEFNFLGLP LRPGEKECPY YMRTGSCKYG SNCRFHHPEP TIMAGEDSSS GYSKGRSIPM 300 QGSSQSTVTS WSSSRPTNET TSYVPPMMYP PTQSIPSPTP EWNNYQAPVY QASEKSLPTP 360 PAFAMSNSGT EKFNPRHSLP LLGEDYPERP GQPECSYFIK TGDCKYKSNC KFHHPKTQLT 420 RTQTLLNDKG LPLRPDQAIC SYYSRYGICK FGPNCKFDHP DNYSHSPSSG WSEFDQPPFG 480 NPDSTNGARV VRKGSGSGSL VQQSV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48440.1 | 1e-101 | C3H family protein |