PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019160733.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 433aa MW: 48079.6 Da PI: 6.8709

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019160733.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	60.3	6e-19	133	222	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY++YA vGF+ r+ +++++ r+g +++++ Cs+ g++++ + + t+k +r+r+++r+gCkak+ k++++g + v+ le+ H+H ++ XP_019160733.1 133 FYKQYAGAVGFDCRQGSNRRR-RDGVVVEKHVLCSRDGFKQTISVDakTNKVKRRRVTNRVGCKAKVFYKLKSNGLYSVHFLEERHTHLMC 222 9*************98886.9999**********98776655788999********************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence
MEPGNLSCAA VNLDSVGGVC DKDNSTNVGG CDELTLDSVG VEGNGGCDEV KSSDVCVEGS 60 DGGCNEGNST DVGVEGNGGC CNEDYSTDVR VGGSVCDLEI SPGLTKYWRP VCGDSLKPHV 120 GQKFDSLDGA IAFYKQYAGA VGFDCRQGSN RRRRDGVVVE KHVLCSRDGF KQTISVDAKT 180 NKVKRRRVTN RVGCKAKVFY KLKSNGLYSV HFLEERHTHL MCSIIARQFL KVNRSLDAGH 240 QMFIASCFRA NIGSVLSYRF FKEIVGDYSN VGATGVDFKN FKRDLMAYIL NGDAQLFIDT 300 LFKRRELCEA FEFEYDVDDV DQLSRVFWAC LGRILLCLVM WYKLVFVPFT GIDNHKRSIT 360 FGAGLLTRED VDSYVWLLEK FKKTMRHDPI CVVTDQDPAV KVGPVLSKDE VFRRKLNGIV 420 WNKSLDSKAF EDA

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence

MEPGNLSCAA VNLDSVGGVC DKDNSTNVGG CDELTLDSVG VEGNGGCDEV KSSDVCVEGS  60
DGGCNEGNST DVGVEGNGGC CNEDYSTDVR VGGSVCDLEI SPGLTKYWRP VCGDSLKPHV  120
GQKFDSLDGA IAFYKQYAGA VGFDCRQGSN RRRRDGVVVE KHVLCSRDGF KQTISVDAKT  180
NKVKRRRVTN RVGCKAKVFY KLKSNGLYSV HFLEERHTHL MCSIIARQFL KVNRSLDAGH  240
QMFIASCFRA NIGSVLSYRF FKEIVGDYSN VGATGVDFKN FKRDLMAYIL NGDAQLFIDT  300
LFKRRELCEA FEFEYDVDDV DQLSRVFWAC LGRILLCLVM WYKLVFVPFT GIDNHKRSIT  360
FGAGLLTRED VDSYVWLLEK FKKTMRHDPI CVVTDQDPAV KVGPVLSKDE VFRRKLNGIV  420
WNKSLDSKAF EDA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	184	188	KRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-26	FAR1 family protein