PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019160724.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 237aa MW: 26183.7 Da PI: 6.0351 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 31 | 3.2e-10 | 19 | 66 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ie + r vtfskR+ +++ KA+ + ++a + + ++ss+g ++ + XP_019160724.1 19 LIECDNARAVTFSKRKRTLFEKAKRVAASTGATIGIFLISSKGYMHAF 66 5888899**************************************998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence |
MEGEPERKNK GRQKIEMKLI ECDNARAVTF SKRKRTLFEK AKRVAASTGA TIGIFLISSK 60 GYMHAFGTCC VHAIINEYRA RRSNAGIAMA QNDDHQLDLL NGDPVDKLKQ ILECQDVSLL 120 LGPHFDPSNL EHVKAAYAWF DDCCTKLKAK KQQFQVSANE QMVCIPSFAN EFDLNVTAGS 180 PNQILVSANL VRGFNLNVAP TADDDEEMIS AASRVPSFNL NVTPGADDEE ETIRTSS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36590.1 | 9e-15 | M-type_MADS family protein |