PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019160355.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

CO-like

Protein Properties

Length: 372aa MW: 40409.3 Da PI: 7.1235

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019160355.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	16	2.5e-05	33	65	4	36
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36 + C+ ++ + fC+ + ++C +C + H XP_019160355.1 33 KPCDYCKVAVALVFCRVDAIFMCLECDAKVHAT 65 68***999***************999954 PP
2	zf-B_box	25.7	2.4e-08	75	120	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ ++ C+ + lC +C +H+ H++vp+ XP_019160355.1 75 VWVCEVCEHAPAAVTCKADAAALCVTCDRDIHSAnplaqrHERVPV 120 689*****************************66899999999986 PP
3	CCT	69.7	7.4e-24	298	341	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++ XP_019160355.1 298 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 341 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence
MVIANCGGGC GGSDSVINSR CLSGGWGAAA AAKPCDYCKV AVALVFCRVD AIFMCLECDA 60 KVHATNKLGS KHARVWVCEV CEHAPAAVTC KADAAALCVT CDRDIHSANP LAQRHERVPV 120 APFYDTAESV VKSTAATLLV PMNDSNPPNF AHDNFASDPW TSSASITSSK LPENAAGGMK 180 SAEFSLFDSD NFLDFEYPVS WESNSHQNQY NSDRVVPIQT IKTSAPIIPQ EKHFEIDFTR 240 SNLTSYNSGF TKPSLSVSSS LDVGVVPDGS SVSEISYRNI GGGSVDSRGG SQWNGMDREA 300 RVLRYREKRK NRKFEKTIRY ASRKAYAETR PRIKGRFAKR TEVESESDID TLFSSADSAA 360 DVGRFSVVPL IW

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence

MVIANCGGGC GGSDSVINSR CLSGGWGAAA AAKPCDYCKV AVALVFCRVD AIFMCLECDA  60
KVHATNKLGS KHARVWVCEV CEHAPAAVTC KADAAALCVT CDRDIHSANP LAQRHERVPV  120
APFYDTAESV VKSTAATLLV PMNDSNPPNF AHDNFASDPW TSSASITSSK LPENAAGGMK  180
SAEFSLFDSD NFLDFEYPVS WESNSHQNQY NSDRVVPIQT IKTSAPIIPQ EKHFEIDFTR  240
SNLTSYNSGF TKPSLSVSSS LDVGVVPDGS SVSEISYRNI GGGSVDSRGG SQWNGMDREA  300
RVLRYREKRK NRKFEKTIRY ASRKAYAETR PRIKGRFAKR TEVESESDID TLFSSADSAA  360
DVGRFSVVPL IW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57660.1	6e-91	CO-like family protein