PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019160131.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

LBD

Protein Properties

Length: 296aa MW: 32591.3 Da PI: 7.9507

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019160131.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	87.4	1.9e-27	43	145	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C++dC+l+p++ p++q++++ +++k++G++ +++l++a p+ r+++++sl+yeA+ r+ +P++G++g++ +++++l+ + XP_019160131.1 43 SCNGCRVLRKGCSDDCTLRPCLhwinsPQSQANATIFLAKFYGRAGLINLINAGPDVLRPAIFKSLLYEACGRIINPIHGSAGLVGEGRWELCGE 137 6*********************************************************************************************9 PP DUF260 91 kaelallk 98 ++e++l + XP_019160131.1 138 AVEAVLKG 145 99988765 PP

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence
MCWKDSPSPP TYIPPSPLLL PFIPFYFFFT LHSLISLKSL RMSCNGCRVL RKGCSDDCTL 60 RPCLHWINSP QSQANATIFL AKFYGRAGLI NLINAGPDVL RPAIFKSLLY EACGRIINPI 120 HGSAGLVGEG RWELCGEAVE AVLKGMPITP VSTGHGGAPA RPIIPLNGSD IRHFSKDSRP 180 VRRVRTRNRF KRSASVQGGE LLPAFDEFTA EPTKFSITGW DSDKPENDGS NRAPSHDSLS 240 VETVEPSLVN REWPVWLPEN DTWTGDENGE PILELTLGVN PARRAPPAEK FCISSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	9e-66	LBD family protein