PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019159698.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | LBD | ||||||||
Protein Properties | Length: 192aa MW: 21185.3 Da PI: 8.9777 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 131 | 5.1e-41 | 26 | 126 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+C+++C+++pyf ++p+kfa+vhk+FGasnv+kl+ ++p +r da++slvyeA++r+rdPvyG++g i++lqqql+ l++el+ XP_019159698.1 26 PCAACKLLRRRCVEECPFSPYFSPHEPHKFAAVHKVFGASNVSKLIMEVPVRQRADAANSLVYEANVRLRDPVYGCMGAISALQQQLQYLQSELN 120 7********************************************************************************************** PP DUF260 96 llkeel 101 ++k++l XP_019159698.1 121 SVKAQL 126 *99885 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence |
MEMEKKLKTE TEASPSQTAA LNTVTPCAAC KLLRRRCVEE CPFSPYFSPH EPHKFAAVHK 60 VFGASNVSKL IMEVPVRQRA DAANSLVYEA NVRLRDPVYG CMGAISALQQ QLQYLQSELN 120 SVKAQLLRYK YRQVVVNGGT QTPPVLMNSM AVSVAEPPQA PPHSSPSLFT TSSNMASFSS 180 VMQNNNNISF FQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 8e-63 | LBD family protein |