PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019159584.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 499aa    MW: 55830.5 Da    PI: 6.3637
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019159584.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS420.41.5e-1281404991374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lL++cA+avs++d++ a++l+ +l +++s +g+p+qRl ay++e+L arla       k+ ++++ s   s e l+++++++ev+P++kf++
  XP_019159584.1 140 LKQLLVACAKAVSDNDFSTAESLMPELCQMVSVSGEPIQRLGAYMLEGLVARLAV------KSPRCKKPS---SFELLSSMHILNEVCPYFKFGY 225
                     689***************************************************9......777888887...899******************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     ++aN aI ea++ e+rvHiiDf+i+qG QW++L+qa+a+Rp+gpp++RiTg+++++s   ++  l+ +g++L+k+Ae+++vpf+f++ ++  ++ 
  XP_019159584.1 226 MAANGAIAEAMKDEKRVHIIDFQIGQGSQWVTLIQAFAARPGGPPEIRITGIDDSTSAyaRRGGLSIVGRNLSKLAESFKVPFQFHAATMPGCTV 320
                     ******************************************************998899999************************9999**** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     l+le+L ++pgE laVn++++lh+++      +++rd++L+lvks +Pkvv++ve+e++ n++ F  rfleal+yysa+f+sl+++lpr++++ri
  XP_019159584.1 321 LQLENLGIQPGEPLAVNFAFMLHHTP------DNHRDQLLRLVKSQNPKVVTLVEHESQSNTAAFYPRFLEALDYYSAMFESLDMTLPRNHKQRI 409
                     *************************9......7789*********************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +vE+++l+r++vn++aceg+er++rhe l kW++r+++aGF+p+pls+ ++ ++k+ll++++ ++yr+ee++g+l+lgW++r Lv+ +aW+
  XP_019159584.1 410 NVEQHCLARDVVNIIACEGTERVKRHELLDKWKSRFRMAGFSPYPLSSLVNGTIKTLLENYS-EEYRLEERDGALYLGWRNRDLVASCAWK 499
                     **************************************************************.55*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    
MSNAMYYQPV QKAETYCLPQ IQNLDHQPSF TNNGGNHAIH PHCVSYYTEF SLMSWAHGLH  60
NSSSTVSFSP NGSSVSQQES HPYPFGDEVS DLDIKDKLRE LESVMLGPGS DIVDSYANAL  120
VSPEIDSWEQ MIVAIPRGDL KQLLVACAKA VSDNDFSTAE SLMPELCQMV SVSGEPIQRL  180
GAYMLEGLVA RLAVKSPRCK KPSSFELLSS MHILNEVCPY FKFGYMAANG AIAEAMKDEK  240
RVHIIDFQIG QGSQWVTLIQ AFAARPGGPP EIRITGIDDS TSAYARRGGL SIVGRNLSKL  300
AESFKVPFQF HAATMPGCTV LQLENLGIQP GEPLAVNFAF MLHHTPDNHR DQLLRLVKSQ  360
NPKVVTLVEH ESQSNTAAFY PRFLEALDYY SAMFESLDMT LPRNHKQRIN VEQHCLARDV  420
VNIIACEGTE RVKRHELLDK WKSRFRMAGF SPYPLSSLVN GTIKTLLENY SEEYRLEERD  480
GALYLGWRNR DLVASCAWK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.10.0GRAS family protein