PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019159548.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

SBP

Protein Properties

Length: 344aa MW: 36900.3 Da PI: 7.6893

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019159548.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	130.2	7.2e-41	182	259	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+egC+adl++ak+yhrrhkvCe+h+ka++v++ gl+qrfCqqCsrfh lsefD++krsCrrrLa+hn+rrrk+ + XP_019159548.1 182 RCQAEGCNADLTHAKHYHRRHKVCEFHAKAATVIAGGLTQRFCQQCSRFHVLSEFDNGKRSCRRRLADHNRRRRKNPQ 259 6**************************************************************************865 PP

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence
MSERDAMLDY EWGNQSATVM FSGDETAAAA QNHRQFFDPY GGQQTGGFDD AAAAGGSLVG 60 PSAHFAGADH LQLFHHHHPG EQAGQENSAH LCSLYDPRAY GGAAAAAAFQ HGSHQVPLLS 120 QEAAGFVVVP KSEPLGGVEF SGASLGLNLG GRTYFSSAED DFVNRLYRRS RAVDAGSFNT 180 PRCQAEGCNA DLTHAKHYHR RHKVCEFHAK AATVIAGGLT QRFCQQCSRF HVLSEFDNGK 240 RSCRRRLADH NRRRRKNPQQ PNRETAFNNT HHLLDNAQNS SSDTLARSPS DSGANSSPSV 300 TVAVSPPRMS IDCFGQRSYG YLSNAAAAAG SSAASASSLF FSHG

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence

MSERDAMLDY EWGNQSATVM FSGDETAAAA QNHRQFFDPY GGQQTGGFDD AAAAGGSLVG  60
PSAHFAGADH LQLFHHHHPG EQAGQENSAH LCSLYDPRAY GGAAAAAAFQ HGSHQVPLLS  120
QEAAGFVVVP KSEPLGGVEF SGASLGLNLG GRTYFSSAED DFVNRLYRRS RAVDAGSFNT  180
PRCQAEGCNA DLTHAKHYHR RHKVCEFHAK AATVIAGGLT QRFCQQCSRF HVLSEFDNGK  240
RSCRRRLADH NRRRRKNPQQ PNRETAFNNT HHLLDNAQNS SSDTLARSPS DSGANSSPSV  300
TVAVSPPRMS IDCFGQRSYG YLSNAAAAAG SSAASASSLF FSHG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	6e-27	SBP family protein