PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019159490.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 469aa MW: 52027.6 Da PI: 8.3778

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019159490.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.1	3.1e-05	56	78	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C++Cgk F r nL+ H r H XP_019159490.1 56 YLCEICGKGFQRDQNLQLHRRGH 78 56*******************88 PP
2	zf-C2H2	12.9	0.00034	132	154	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ XP_019159490.1 132 WKCDKCSKRYAVQSDWKAHSKTC 154 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 469 aa Download sequence
MTEEEGIISS NCSLVENPIP ESNPPVKKKR NLPGNPDPEA EVIALSPKTL MATNRYLCEI 60 CGKGFQRDQN LQLHRRGHNL PWKLKQRSSK EVRKRVYVCP EKSCVHHHPS RALGDLTGIK 120 KHFCRKHGEK KWKCDKCSKR YAVQSDWKAH SKTCGTREYR CDCGTIFSRR DSFLTHRAFC 180 DALAEETARV TAATVASDMH NVAVLGNISY HFLGAPSLAP PASHFSSIFK PPPRSDDGEG 240 NIPMRHGGLP PWMSQAQRSD SPPVTYTDWD NLIPIKNSDE ILNNASLPLN NMKEVSVPLL 300 FSSQLQPHQP PSTAADMSAT ALLQKAAQIG ATATDPSFLG ILGSKRNNNN INQAQDDQEN 360 PPKKPPSHDH LPLHYSVESQ YENFEITGIL PFRGQDDRGD SNNSSKLFGL YGTTLTSVDD 420 IPGLSHFQMY PSKRRHIQNE EGAGGGQTRD FLGVGIQSIC HPSSLNGWL

Sequence ? help Back to Top

Protein Sequence Length: 469 aa Download sequence

MTEEEGIISS NCSLVENPIP ESNPPVKKKR NLPGNPDPEA EVIALSPKTL MATNRYLCEI  60
CGKGFQRDQN LQLHRRGHNL PWKLKQRSSK EVRKRVYVCP EKSCVHHHPS RALGDLTGIK  120
KHFCRKHGEK KWKCDKCSKR YAVQSDWKAH SKTCGTREYR CDCGTIFSRR DSFLTHRAFC  180
DALAEETARV TAATVASDMH NVAVLGNISY HFLGAPSLAP PASHFSSIFK PPPRSDDGEG  240
NIPMRHGGLP PWMSQAQRSD SPPVTYTDWD NLIPIKNSDE ILNNASLPLN NMKEVSVPLL  300
FSSQLQPHQP PSTAADMSAT ALLQKAAQIG ATATDPSFLG ILGSKRNNNN INQAQDDQEN  360
PPKKPPSHDH LPLHYSVESQ YENFEITGIL PFRGQDDRGD SNNSSKLFGL YGTTLTSVDD  420
IPGLSHFQMY PSKRRHIQNE EGAGGGQTRD FLGVGIQSIC HPSSLNGWL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44160.1	1e-131	C2H2 family protein