PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019159343.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C3H
Protein Properties Length: 362aa    MW: 41075.8 Da    PI: 8.5223
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019159343.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.12.8e-07326226
                    -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                    k++lC+ffar  tC  G+ C F+H+
  XP_019159343.1  3 KRVLCKFFAR-RTCLKGEHCEFSHD 26
                    99********.*************5 PP

2zf-CCCH24.44.9e-083454526
                    --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                    +C f+++ G+C yG+rC++ H+
  XP_019159343.1 34 ICTFYQK-GICAYGSRCRYEHV 54
                    7******.***********997 PP

Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    
MSKRVLCKFF ARRTCLKGEH CEFSHDWHDP PNNICTFYQK GICAYGSRCR YEHVRISQLQ  60
SSAPSSSVLA RQHLLSSSDP LPANYETVVN GVGHGTGITT EHLNSCKRDH YPKKPAWNQK  120
TGPRDLRDDE KNVKLKSLNA ADQSICSFAA AGTCPEGEKC PHIHGDLCPS CGKHCLHPFR  180
PQEREEHIKK CEKLQKHLEA LKHSQEIDCS VCLERVLSKP TAAERKFGIL SECDHPFCIS  240
CIRNWRSSSP SSGFDVNSAL RACPICRKLS YFVIPSVIWY STKEEKQEIL TSYKTKLRSI  300
DCKHFDFGSG TCPFGSSCFY KHAYRDGRLE EVVLRQLGFD DGTTIIVKNI RLSDFLSNLQ  360
RR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.11e-154C3H family protein