PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019159323.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 530aa    MW: 58332.9 Da    PI: 4.9339
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019159323.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS323.83.3e-991705293374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     + L++ Ae +++g+  l q++Larl+++ sp g+p++R+a+yf+eAL++ l + ++       ps++ + + + ++ a+k fsevsP+++f+++t
  XP_019159323.1 170 DHLFKTAELIQTGNSVLSQEILARLNHHLSPIGKPFHRAAFYFKEALQSLLPHATK----PTVPSSS-PFSLVFKIGAYKSFSEVSPMPQFANFT 259
                     789************************************************99332....2222222.34599********************** PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                     +Nqa+lea+eg +r+Hi+Dfdi++G QW++L+q+La  ++ +psl+iT+++sp ++++ el  ++++L +fA+e+++ fef++l +++l++ + +
  XP_019159323.1 260 TNQALLEALEGFDRIHIVDFDIGYGEQWASLMQELALNNGTTPSLKITALASPLKQEQLELGIIRHNLIQFASEINMGFEFETLGVEHLNSSSSW 354
                     ************************************************************************************88888888777 PP

            GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287
                     + +  ++ a+aVnl +   ++  ++vsl+     +L++vk+l+Pk+vv v+  +d+++ +F +++++al+ ys l++sl+a    + ++ +k+E+
  XP_019159323.1 355 S-DSYSEAAIAVNLPVGWLSTN-QQVSLPL----ILSFVKKLQPKIVVSVDTGCDRTDLPFPDHIIHALHSYSNLLESLDAV-NMNPDALQKIEK 442
                     7.5666889*******998885.7777777....*********************************************766.45669999**** PP

            GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +++++ i++ v+++ ++   ++++ ++Wr  + ++GF+p ++s++a++qa+++l+++++ g++ve+++ slvl+W++++L+s+SaWr
  XP_019159323.1 443 FMIQPGIEKTVTARFDSDSPEKTQTQHWRTVFLSSGFTPFSFSNFAESQAECVLKRTPVGGFHVEKRQSSLVLCWQRKELISASAWR 529
                     ****************99999999**************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    
MGGAESELLQ PVPVLLEISG GASAVAPEKC VTEEWEQEPE PLLRWITGDA DDPSMANLSK  60
LLQGGNQAEY EFNGGLGLPD HNLGADQDSS SGSGFLPTSS FPANLQTPSF LSFLDSSDMK  120
PQISNLQHLQ SPSFFMPLPY PYQSESQSLS TPQPAKRHNP GTLGVAETID HLFKTAELIQ  180
TGNSVLSQEI LARLNHHLSP IGKPFHRAAF YFKEALQSLL PHATKPTVPS SSPFSLVFKI  240
GAYKSFSEVS PMPQFANFTT NQALLEALEG FDRIHIVDFD IGYGEQWASL MQELALNNGT  300
TPSLKITALA SPLKQEQLEL GIIRHNLIQF ASEINMGFEF ETLGVEHLNS SSSWSDSYSE  360
AAIAVNLPVG WLSTNQQVSL PLILSFVKKL QPKIVVSVDT GCDRTDLPFP DHIIHALHSY  420
SNLLESLDAV NMNPDALQKI EKFMIQPGIE KTVTARFDSD SPEKTQTQHW RTVFLSSGFT  480
PFSFSNFAES QAECVLKRTP VGGFHVEKRQ SSLVLCWQRK ELISASAWRC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-136GRAS family protein