PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019159022.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C3H
Protein Properties Length: 335aa    MW: 37714.5 Da    PI: 8.5381
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019159022.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.83.8e-08122142526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C+ f++ G C +Gd+C FaHg
  XP_019159022.1 122 VCSEFRK-GKCGRGDNCEFAHG 142
                     7******.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    
MTSVCEFQNI SYPFYLKKAM AELDVSPRKI LSRRGAAEAD GFLDSPTKIE GGVFQKFLPY  60
NDVEDEDEDG DRYSADHFRM YEFKVRRCTR SRSHDWTDCP FAHPGEKARR RDPRKFHYSG  120
TVCSEFRKGK CGRGDNCEFA HGVFESWLHP ARYRTEACKD GKNCKRKVCF FAHSSRQLRI  180
LPVNRYSTGS LSPVHDPAEK NLRKNLCCHS PTSTLMGISH SSPPLSPAKT PFCGYGMTAA  240
KLIEMMSYKE ALTQLVNSLE QVNLNPLSPA TTTINRMTRP FSGNDPIQFS LPNSPSTPGR  300
HSSGSEFLTP QRNTAFSDNG GLTGIDLDWV NDLLT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.12e-79C3H family protein