PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019158897.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C3H

Protein Properties

Length: 712aa MW: 77773 Da PI: 6.5051

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019158897.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.3	2.3e-07	290	310	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg XP_019158897.1 290 PCPDFRK-GACRRGDMCEYAHG 310 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 712 aa Download sequence
MSTDWSNSDN MKDMSKLSVE TDDSFSSLLE LAANNDLDGF KRCVERDGSA VDEVGIWLVR 60 KKGAKQIVKE ERSPLMVAAM YGSIDVLKFL ISLPEVDVNR ACGPDKCTAL HCATSGGSVH 120 AAQVVKLLLS AGADPNIEDA NGQQPADVIV VPPKFPGARA SLEELLLNNI SDGSVGECNL 180 RVHVTTSNGS SPDLSLSPCS PSESASYPLT SKFGDVPANS VQEKKEYSID PSLPDIKNSI 240 YSTDEFRMFS FKVRPCSRAY SHDWTECPFV HPGENARRRD PRKYHYSCVP CPDFRKGACR 300 RGDMCEYAHG VFECWLHPAQ YRTRLCKEGT SCVRRVCFFA HMPEELRPLY VSTGSAVPSP 360 RSTAATATVM DMAAALSLLP GSPSSHSMMS PAFNQPMSPT ANGMSHSSPA WPQPNIPTLH 420 LPGSNLQSSR LRSSLSVRDI PREDLNMLRD FDAQQQLVLN DMACFSQPRT GSASFSRPGS 480 GCTNTLTPSN LDELFSAEIA SSSPRYSDQA AFSPSHKSTI LSQLQQQQQS MLSPINTNMF 540 SPKNASFGVS STGRMSPRSV EPISPMSARL SVFAQREKQH QQLRSLSSRD LGSNNHNTSI 600 VGSPVSNSWS NWGSPSTRPD WSFNGDEPSH LRRSSSFERL NNNNNSEEPD LSWVQSLVKE 660 SPPEMKDKSA APAPRGAVPS GEGLKFSTQT DSIDQSVIGT WLEQMQLDQP VV

Sequence ? help Back to Top

Protein Sequence Length: 712 aa Download sequence

MSTDWSNSDN MKDMSKLSVE TDDSFSSLLE LAANNDLDGF KRCVERDGSA VDEVGIWLVR  60
KKGAKQIVKE ERSPLMVAAM YGSIDVLKFL ISLPEVDVNR ACGPDKCTAL HCATSGGSVH  120
AAQVVKLLLS AGADPNIEDA NGQQPADVIV VPPKFPGARA SLEELLLNNI SDGSVGECNL  180
RVHVTTSNGS SPDLSLSPCS PSESASYPLT SKFGDVPANS VQEKKEYSID PSLPDIKNSI  240
YSTDEFRMFS FKVRPCSRAY SHDWTECPFV HPGENARRRD PRKYHYSCVP CPDFRKGACR  300
RGDMCEYAHG VFECWLHPAQ YRTRLCKEGT SCVRRVCFFA HMPEELRPLY VSTGSAVPSP  360
RSTAATATVM DMAAALSLLP GSPSSHSMMS PAFNQPMSPT ANGMSHSSPA WPQPNIPTLH  420
LPGSNLQSSR LRSSLSVRDI PREDLNMLRD FDAQQQLVLN DMACFSQPRT GSASFSRPGS  480
GCTNTLTPSN LDELFSAEIA SSSPRYSDQA AFSPSHKSTI LSQLQQQQQS MLSPINTNMF  540
SPKNASFGVS STGRMSPRSV EPISPMSARL SVFAQREKQH QQLRSLSSRD LGSNNHNTSI  600
VGSPVSNSWS NWGSPSTRPD WSFNGDEPSH LRRSSSFERL NNNNNSEEPD LSWVQSLVKE  660
SPPEMKDKSA APAPRGAVPS GEGLKFSTQT DSIDQSVIGT WLEQMQLDQP VV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein