PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019158894.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C3H

Protein Properties

Length: 723aa MW: 78934.2 Da PI: 6.5055

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019158894.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.3	2.4e-07	301	321	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg XP_019158894.1 301 PCPDFRK-GACRRGDMCEYAHG 321 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 723 aa Download sequence
MSGGPEQSKY NLSTDWSNSD NMKDMSKLSV ETDDSFSSLL ELAANNDLDG FKRCVERDGS 60 AVDEVGIWLV RKKGAKQIVK EERSPLMVAA MYGSIDVLKF LISLPEVDVN RACGPDKCTA 120 LHCATSGGSV HAAQVVKLLL SAGADPNIED ANGQQPADVI VVPPKFPGAR ASLEELLLNN 180 ISDGSVGECN LRVHVTTSNG SSPDLSLSPC SPSESASYPL TSKFGDVPAN SVQEKKEYSI 240 DPSLPDIKNS IYSTDEFRMF SFKVRPCSRA YSHDWTECPF VHPGENARRR DPRKYHYSCV 300 PCPDFRKGAC RRGDMCEYAH GVFECWLHPA QYRTRLCKEG TSCVRRVCFF AHMPEELRPL 360 YVSTGSAVPS PRSTAATATV MDMAAALSLL PGSPSSHSMM SPAFNQPMSP TANGMSHSSP 420 AWPQPNIPTL HLPGSNLQSS RLRSSLSVRD IPREDLNMLR DFDAQQQLVL NDMACFSQPR 480 TGSASFSRPG SGCTNTLTPS NLDELFSAEI ASSSPRYSDQ AAFSPSHKST ILSQLQQQQQ 540 SMLSPINTNM FSPKNASFGV SSTGRMSPRS VEPISPMSAR LSVFAQREKQ HQQLRSLSSR 600 DLGSNNHNTS IVGSPVSNSW SNWGSPSTRP DWSFNGDEPS HLRRSSSFER LNNNNNSEEP 660 DLSWVQSLVK ESPPEMKDKS AAPAPRGAVP SGEGLKFSTQ TDSIDQSVIG TWLEQMQLDQ 720 PVV

Sequence ? help Back to Top

Protein Sequence Length: 723 aa Download sequence

MSGGPEQSKY NLSTDWSNSD NMKDMSKLSV ETDDSFSSLL ELAANNDLDG FKRCVERDGS  60
AVDEVGIWLV RKKGAKQIVK EERSPLMVAA MYGSIDVLKF LISLPEVDVN RACGPDKCTA  120
LHCATSGGSV HAAQVVKLLL SAGADPNIED ANGQQPADVI VVPPKFPGAR ASLEELLLNN  180
ISDGSVGECN LRVHVTTSNG SSPDLSLSPC SPSESASYPL TSKFGDVPAN SVQEKKEYSI  240
DPSLPDIKNS IYSTDEFRMF SFKVRPCSRA YSHDWTECPF VHPGENARRR DPRKYHYSCV  300
PCPDFRKGAC RRGDMCEYAH GVFECWLHPA QYRTRLCKEG TSCVRRVCFF AHMPEELRPL  360
YVSTGSAVPS PRSTAATATV MDMAAALSLL PGSPSSHSMM SPAFNQPMSP TANGMSHSSP  420
AWPQPNIPTL HLPGSNLQSS RLRSSLSVRD IPREDLNMLR DFDAQQQLVL NDMACFSQPR  480
TGSASFSRPG SGCTNTLTPS NLDELFSAEI ASSSPRYSDQ AAFSPSHKST ILSQLQQQQQ  540
SMLSPINTNM FSPKNASFGV SSTGRMSPRS VEPISPMSAR LSVFAQREKQ HQQLRSLSSR  600
DLGSNNHNTS IVGSPVSNSW SNWGSPSTRP DWSFNGDEPS HLRRSSSFER LNNNNNSEEP  660
DLSWVQSLVK ESPPEMKDKS AAPAPRGAVP SGEGLKFSTQ TDSIDQSVIG TWLEQMQLDQ  720
PVV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein