PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019158776.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 486aa    MW: 54424.5 Da    PI: 6.4986
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019158776.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS295.71.2e-90994722373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     ++lLl+cA a++++d +laq++++ l++ asp gdp+qRl++ f++AL +r +r +++++   +  +t+ ++++e       +++v P+++f++ 
  XP_019158776.1  99 EKLLLHCASALETNDVTLAQQVMWVLNNVASPMGDPNQRLTSWFLRALVSRASRVCPSTFGGGNGVHTRLMTVTEL----AGYVDVIPWHRFGFC 189
                     589***************************************************9999999888888884444443....4589*********** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl....... 181
                     +aN+aIl+av+ge++vHi+Df+i++++QWp+L++aLa+Rpegpp lRi +++   s+    + + e++g rLakfA+  +vpfefnv+       
  XP_019158776.1 190 AANSAILRAVQGENKVHILDFSITHCMQWPTLIDALAKRPEGPPFLRISVLSWRPSVpplLNASCEQLGLRLAKFAKFRDVPFEFNVIgsdyipq 284
                     ****************************************************97777899999*****************************999 PP

            GRAS 182 .....vak.rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270
                          +++  l++l++  L+++ +EalaVn++  l +l+        +rd++++++k+l+P +v++v++++d++++s++ r++ +++y +  fd+
  XP_019158776.1 285 efpdfHHNfILNSLTPPCLNLRDDEALAVNCQNWLRYLP--------CRDTFIDAIKGLNPSIVTIVDEDCDLGAPSLVSRITACFNYLWIPFDA 371
                     99998555588999************************9........899********************************************* PP

            GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdr 365
                     le+ lp++s +ri +E+  +g +i+n++  eg++r+er e+ +k ++r+++ GF ++p+ e++  ++k+ll +++  g+ ++ e++ lvl+Wk++
  XP_019158776.1 372 LETFLPKDSPQRIEYEAD-IGHKIENIIGFEGDQRIERLESGMKLSQRMKNNGFLSAPFCEDTIGEVKCLLDEHA-SGWGMKVEDDMLVLTWKGH 464
                     ******************.********************************************************.66677777889******** PP

            GRAS 366 pLvsvSaW 373
                     + v ++ W
  XP_019158776.1 465 SAVYATTW 472
                     ******99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    
MCVCVYIRNI DLCIYILRKG THKAYDNKHL WLIKHPPLVK ETKRHQSTMK ADLRGNPTSF  60
LFQNPNLFGN SPQPSSDLTG ALRGCSSSSL GSLDGACTEK LLLHCASALE TNDVTLAQQV  120
MWVLNNVASP MGDPNQRLTS WFLRALVSRA SRVCPSTFGG GNGVHTRLMT VTELAGYVDV  180
IPWHRFGFCA ANSAILRAVQ GENKVHILDF SITHCMQWPT LIDALAKRPE GPPFLRISVL  240
SWRPSVPPLL NASCEQLGLR LAKFAKFRDV PFEFNVIGSD YIPQEFPDFH HNFILNSLTP  300
PCLNLRDDEA LAVNCQNWLR YLPCRDTFID AIKGLNPSIV TIVDEDCDLG APSLVSRITA  360
CFNYLWIPFD ALETFLPKDS PQRIEYEADI GHKIENIIGF EGDQRIERLE SGMKLSQRMK  420
NNGFLSAPFC EDTIGEVKCL LDEHASGWGM KVEDDMLVLT WKGHSAVYAT TWVVSPQTQA  480
DIEIKD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-119GRAS family protein