PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019158375.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

ARF

Protein Properties

Length: 684aa MW: 76001 Da PI: 6.516

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019158375.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	73	3.7e-23	133	233	1	98
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k+lt sd++++g +++ +k+a+e+ +++ + +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD +vF + +++ XP_019158375.1 133 FCKILTASDTSTHGGFSVLRKHANEClppldMSQATPTQDLIAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFL--RADNG 225 99**************************9555556679********************************************..44899 PP ..EEEEE- CS B3 91 elvvkvfr 98 el+v+v+r XP_019158375.1 226 ELRVGVRR 233 99**98 PP
2	Auxin_resp	101.6	1e-33	259	338	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t++ F v+Y+Pr+ s+F++ ++k+++a+++ +svGmRf+m+fe+eds+err+sGt+vg+ d+++ +W++SkWrsLk XP_019158375.1 259 ASHAIRTETLFVVYYKPRT--SQFIIGLNKYLEAIRHGFSVGMRFRMRFEGEDSPERRFSGTIVGLGDISS-QWKDSKWRSLK 338 789*************6..9******************************************777.*******96 PP

Sequence ? help Back to Top
Protein Sequence Length: 684 aa Download sequence
MAHVDVGIRG GVSHGVQRQI SGLGCDDLSP ELWKSCAGPL VDVPKEGERA YYFPQGHIEQ 60 LEVSTNQALT QQIPQFGLPS KILCRVVNLQ LLAEAENDEV YAQITLLPEA DQTEPTSPDE 120 CIPDPPKRIV HSFCKILTAS DTSTHGGFSV LRKHANECLP PLDMSQATPT QDLIAKDLHG 180 YEWRFKHIFR GQPRRHLLTT GWSTFVTSKR LVAGDAFVFL RADNGELRVG VRRLARQQSS 240 MPPSVLSSQS MHLGVLATAS HAIRTETLFV VYYKPRTSQF IIGLNKYLEA IRHGFSVGMR 300 FRMRFEGEDS PERRFSGTIV GLGDISSQWK DSKWRSLKIQ WDEPATIPRP DRVSPWEIEP 360 FVASASADIV QPGTKTKRPR PLELPSNEDK TTSVASPFWY SGPKSAGETV SNGDQAFWQL 420 KQKDLNGRAC NESSVTASRA HPSGMWQPPS GSETIEDSTN MPPRLSSISE FSSPIPSIAS 480 NGALLDQVDR SKKSAIRIFG IEFSNADNYR REKETPCSNT MPSNANAVCD ANGVGAVQKS 540 EHLKSSREIK LVEASLKDTL SKPSVTTSRT CTKVQMEGSR FGRAVDLTTM KDYDDLLNEL 600 EEIFELKGEL CPRSKWEVIY ADDEGDMMLV GDDPWPEFCK MVRRIFICSS EKVKKMSSKC 660 KLPLLSDEGE VTIVSLESEL KSEG

Sequence ? help Back to Top

Protein Sequence Length: 684 aa Download sequence

MAHVDVGIRG GVSHGVQRQI SGLGCDDLSP ELWKSCAGPL VDVPKEGERA YYFPQGHIEQ  60
LEVSTNQALT QQIPQFGLPS KILCRVVNLQ LLAEAENDEV YAQITLLPEA DQTEPTSPDE  120
CIPDPPKRIV HSFCKILTAS DTSTHGGFSV LRKHANECLP PLDMSQATPT QDLIAKDLHG  180
YEWRFKHIFR GQPRRHLLTT GWSTFVTSKR LVAGDAFVFL RADNGELRVG VRRLARQQSS  240
MPPSVLSSQS MHLGVLATAS HAIRTETLFV VYYKPRTSQF IIGLNKYLEA IRHGFSVGMR  300
FRMRFEGEDS PERRFSGTIV GLGDISSQWK DSKWRSLKIQ WDEPATIPRP DRVSPWEIEP  360
FVASASADIV QPGTKTKRPR PLELPSNEDK TTSVASPFWY SGPKSAGETV SNGDQAFWQL  420
KQKDLNGRAC NESSVTASRA HPSGMWQPPS GSETIEDSTN MPPRLSSISE FSSPIPSIAS  480
NGALLDQVDR SKKSAIRIFG IEFSNADNYR REKETPCSNT MPSNANAVCD ANGVGAVQKS  540
EHLKSSREIK LVEASLKDTL SKPSVTTSRT CTKVQMEGSR FGRAVDLTTM KDYDDLLNEL  600
EEIFELKGEL CPRSKWEVIY ADDEGDMMLV GDDPWPEFCK MVRRIFICSS EKVKKMSSKC  660
KLPLLSDEGE VTIVSLESEL KSEG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	377	381	KRPRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G23980.1	0.0	ARF family protein