PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019158374.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | ARF | ||||||||
Protein Properties | Length: 710aa MW: 78949.7 Da PI: 6.6117 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 64.1 | 2.2e-20 | 133 | 259 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT...............................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TT CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...............................ggkkeesktltledesgrsWevkliyrkksgryvltkG 64 f+k+lt sd++++g +++ +k+a+e+ +++ + +++l+ +d++g +W++k+i+r++++r++lt+G XP_019158374.1 133 FCKILTASDTSTHGGFSVLRKHANEClpplvislhlcladppalwililahrlflqdMSQATPTQDLIAKDLHGYEWRFKHIFRGQPRRHLLTTG 227 99*************************************999999999999999999555556679***************************** PP HHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 65 WkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 W+ Fv +++L +gD +vF + +++el+v+v+r XP_019158374.1 228 WSTFVTSKRLVAGDAFVFL--RADNGELRVGVRR 259 *******************..4489999****98 PP | |||||||
2 | Auxin_resp | 101.6 | 1.1e-33 | 285 | 364 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t++ F v+Y+Pr+ s+F++ ++k+++a+++ +svGmRf+m+fe+eds+err+sGt+vg+ d+++ +W++SkWrsLk XP_019158374.1 285 ASHAIRTETLFVVYYKPRT--SQFIIGLNKYLEAIRHGFSVGMRFRMRFEGEDSPERRFSGTIVGLGDISS-QWKDSKWRSLK 364 789***************6..9**********************************************777.*********96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 710 aa Download sequence |
MAHVDVGIRG GVSHGVQRQI SGLGCDDLSP ELWKSCAGPL VDVPKEGERA YYFPQGHIEQ 60 LEVSTNQALT QQIPQFGLPS KILCRVVNLQ LLAEAENDEV YAQITLLPEA DQTEPTSPDE 120 CIPDPPKRIV HSFCKILTAS DTSTHGGFSV LRKHANECLP PLVISLHLCL ADPPALWILI 180 LAHRLFLQDM SQATPTQDLI AKDLHGYEWR FKHIFRGQPR RHLLTTGWST FVTSKRLVAG 240 DAFVFLRADN GELRVGVRRL ARQQSSMPPS VLSSQSMHLG VLATASHAIR TETLFVVYYK 300 PRTSQFIIGL NKYLEAIRHG FSVGMRFRMR FEGEDSPERR FSGTIVGLGD ISSQWKDSKW 360 RSLKIQWDEP ATIPRPDRVS PWEIEPFVAS ASADIVQPGT KTKRPRPLEL PSNEDKTTSV 420 ASPFWYSGPK SAGETVSNGD QAFWQLKQKD LNGRACNESS VTASRAHPSG MWQPPSGSET 480 IEDSTNMPPR LSSISEFSSP IPSIASNGAL LDQVDRSKKS AIRIFGIEFS NADNYRREKE 540 TPCSNTMPSN ANAVCDANGV GAVQKSEHLK SSREIKLVEA SLKDTLSKPS VTTSRTCTKV 600 QMEGSRFGRA VDLTTMKDYD DLLNELEEIF ELKGELCPRS KWEVIYADDE GDMMLVGDDP 660 WPEFCKMVRR IFICSSEKVK KMSSKCKLPL LSDEGEVTIV SLESELKSEG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 403 | 407 | KRPRP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23980.1 | 0.0 | ARF family protein |