PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019158373.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

ARF

Protein Properties

Length: 710aa MW: 78949.7 Da PI: 6.6117

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019158373.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	64.1	2.2e-20	133	259	1	98
EEEE-..-HHHHTT-EE--HHH.HTT...............................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TT CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...............................ggkkeesktltledesgrsWevkliyrkksgryvltkG 64 f+k+lt sd++++g +++ +k+a+e+ +++ + +++l+ +d++g +W++k+i+r++++r++lt+G XP_019158373.1 133 FCKILTASDTSTHGGFSVLRKHANEClpplvislhlcladppalwililahrlflqdMSQATPTQDLIAKDLHGYEWRFKHIFRGQPRRHLLTTG 227 99***********************************999999999999999999555556679************************* PP HHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 65 WkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 W+ Fv +++L +gD +vF + +++el+v+v+r XP_019158373.1 228 WSTFVTSKRLVAGDAFVFL--RADNGELRVGVRR 259 ***************..4489999**98 PP
2	Auxin_resp	101.6	1.1e-33	285	364	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t++ F v+Y+Pr+ s+F++ ++k+++a+++ +svGmRf+m+fe+eds+err+sGt+vg+ d+++ +W++SkWrsLk XP_019158373.1 285 ASHAIRTETLFVVYYKPRT--SQFIIGLNKYLEAIRHGFSVGMRFRMRFEGEDSPERRFSGTIVGLGDISS-QWKDSKWRSLK 364 789*************6..9******************************************777.*******96 PP

Sequence ? help Back to Top
Protein Sequence Length: 710 aa Download sequence
MAHVDVGIRG GVSHGVQRQI SGLGCDDLSP ELWKSCAGPL VDVPKEGERA YYFPQGHIEQ 60 LEVSTNQALT QQIPQFGLPS KILCRVVNLQ LLAEAENDEV YAQITLLPEA DQTEPTSPDE 120 CIPDPPKRIV HSFCKILTAS DTSTHGGFSV LRKHANECLP PLVISLHLCL ADPPALWILI 180 LAHRLFLQDM SQATPTQDLI AKDLHGYEWR FKHIFRGQPR RHLLTTGWST FVTSKRLVAG 240 DAFVFLRADN GELRVGVRRL ARQQSSMPPS VLSSQSMHLG VLATASHAIR TETLFVVYYK 300 PRTSQFIIGL NKYLEAIRHG FSVGMRFRMR FEGEDSPERR FSGTIVGLGD ISSQWKDSKW 360 RSLKIQWDEP ATIPRPDRVS PWEIEPFVAS ASADIVQPGT KTKRPRPLEL PSNEDKTTSV 420 ASPFWYSGPK SAGETVSNGD QAFWQLKQKD LNGRACNESS VTASRAHPSG MWQPPSGSET 480 IEDSTNMPPR LSSISEFSSP IPSIASNGAL LDQVDRSKKS AIRIFGIEFS NADNYRREKE 540 TPCSNTMPSN ANAVCDANGV GAVQKSEHLK SSREIKLVEA SLKDTLSKPS VTTSRTCTKV 600 QMEGSRFGRA VDLTTMKDYD DLLNELEEIF ELKGELCPRS KWEVIYADDE GDMMLVGDDP 660 WPEFCKMVRR IFICSSEKVK KMSSKCKLPL LSDEGEVTIV SLESELKSEG

Sequence ? help Back to Top

Protein Sequence Length: 710 aa Download sequence

MAHVDVGIRG GVSHGVQRQI SGLGCDDLSP ELWKSCAGPL VDVPKEGERA YYFPQGHIEQ  60
LEVSTNQALT QQIPQFGLPS KILCRVVNLQ LLAEAENDEV YAQITLLPEA DQTEPTSPDE  120
CIPDPPKRIV HSFCKILTAS DTSTHGGFSV LRKHANECLP PLVISLHLCL ADPPALWILI  180
LAHRLFLQDM SQATPTQDLI AKDLHGYEWR FKHIFRGQPR RHLLTTGWST FVTSKRLVAG  240
DAFVFLRADN GELRVGVRRL ARQQSSMPPS VLSSQSMHLG VLATASHAIR TETLFVVYYK  300
PRTSQFIIGL NKYLEAIRHG FSVGMRFRMR FEGEDSPERR FSGTIVGLGD ISSQWKDSKW  360
RSLKIQWDEP ATIPRPDRVS PWEIEPFVAS ASADIVQPGT KTKRPRPLEL PSNEDKTTSV  420
ASPFWYSGPK SAGETVSNGD QAFWQLKQKD LNGRACNESS VTASRAHPSG MWQPPSGSET  480
IEDSTNMPPR LSSISEFSSP IPSIASNGAL LDQVDRSKKS AIRIFGIEFS NADNYRREKE  540
TPCSNTMPSN ANAVCDANGV GAVQKSEHLK SSREIKLVEA SLKDTLSKPS VTTSRTCTKV  600
QMEGSRFGRA VDLTTMKDYD DLLNELEEIF ELKGELCPRS KWEVIYADDE GDMMLVGDDP  660
WPEFCKMVRR IFICSSEKVK KMSSKCKLPL LSDEGEVTIV SLESELKSEG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	403	407	KRPRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G23980.1	0.0	ARF family protein