PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019158288.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

G2-like

Protein Properties

Length: 352aa MW: 39727.2 Da PI: 9.2643

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019158288.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.1	1.5e-31	84	137	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 rlrWtpeLH++Fv+av++LGG++kAtPk + elm+vkg+ ++hvkSHLQ+YR+ XP_019158288.1 84 RRLRWTPELHRCFVHAVQRLGGQDKATPKLVAELMNVKGINISHVKSHLQMYRS 137 69***************************************************7 PP
2	Myb_DNA-binding	49.1	1.3e-15	85	136	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r+rWT+e++ +v+av++lGg t+k++a+ m+ kg ++ks++q+y+ XP_019158288.1 85 RLRWTPELHRCFVHAVQRLGGQdkaTPKLVAELMNvKGINISHVKSHLQMYR 136 89************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence
MMKEQKSSTQ VSQTEIPEIE SEEEEEEEEY SKESKKCGKR SDNGVVVSIS SSNNSTVEGD 60 NVKKTTNSSS SAGNVRPYKR STVRRLRWTP ELHRCFVHAV QRLGGQDKAT PKLVAELMNV 120 KGINISHVKS HLQMYRSKKA YEPNQATCDG GFLLDNEDHH VYNFSHFHRL HGFNQTPTPI 180 LRSEDGVIKI AGANYVYTKV AASNILRGSG FHGQNNITNY SLISSDFPMM FTQRFSSADE 240 TMSTPTPSSS TNLQQLHRHR TTDEGGERMG RIIKKRKFAE VNNLDLNLSL NSRINDEQRL 300 KYEDSNHSTK LCLSLYSSEG NHHHGIRRRR RRKQEEGTGM GGSSSCSLDL SL

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence

MMKEQKSSTQ VSQTEIPEIE SEEEEEEEEY SKESKKCGKR SDNGVVVSIS SSNNSTVEGD  60
NVKKTTNSSS SAGNVRPYKR STVRRLRWTP ELHRCFVHAV QRLGGQDKAT PKLVAELMNV  120
KGINISHVKS HLQMYRSKKA YEPNQATCDG GFLLDNEDHH VYNFSHFHRL HGFNQTPTPI  180
LRSEDGVIKI AGANYVYTKV AASNILRGSG FHGQNNITNY SLISSDFPMM FTQRFSSADE  240
TMSTPTPSSS TNLQQLHRHR TTDEGGERMG RIIKKRKFAE VNNLDLNLSL NSRINDEQRL  300
KYEDSNHSTK LCLSLYSSEG NHHHGIRRRR RRKQEEGTGM GGSSSCSLDL SL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	327	332	RRRRRR
2	327	333	RRRRRRK
3	327	334	RRRRRRKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40260.1	3e-38	G2-like family protein