PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019158177.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C3H
Protein Properties Length: 311aa    MW: 35290.8 Da    PI: 8.2731
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019158177.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.11.4e-086791126
                    --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                    ykt+ C  f++ G C+ G+ C+FaHg
  XP_019158177.1 67 YKTRVCAKFLE-GKCRNGEHCTFAHG 91
                    9**********.*************8 PP
2zf-CCCH25.81.8e-08125148225
                     -S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                     + ++C+ f+ + +C+yG++C+F H
  XP_019158177.1 125 RVKICKKFYNGEECPYGENCNFLH 148
                     6789******66************ PP
3zf-CCCH36.96e-12206232127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +k +lC+ +  +G+C++G+rC++aHg+
  XP_019158177.1 206 WKKRLCSKYEIMGQCPFGERCHYAHGQ 232
                     89***********************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    
MSFPDPPPPI LLNQEQSELN PQFDHAPPFK RRRNSENNQL SSASFPPMNP RVNLPNIPGK  60
GTGHIFYKTR VCAKFLEGKC RNGEHCTFAH GADDLREPPP NWQDLVREKD RVAGSWNDDQ  120
KIIPRVKICK KFYNGEECPY GENCNFLHER PPKFRSDMVK DRMESNAITI GTTNCITARR  180
SDSDQLESHK HASADPDIHR PKLAFWKKRL CSKYEIMGQC PFGERCHYAH GQSELQAFSG  240
RSDTGEATNF PPVPIEPLSI AAAGGDSFRA NQVAWKDEQG AKKFHLWKLT KKISGIYGDW  300
IDEANPPHLL V
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.12e-66C3H family protein