PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019158027.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 692aa MW: 79345.6 Da PI: 9.0456

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019158027.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	59.2	1.3e-18	29	129	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdgkwevtklel 83 +fYn+YA +v F++r s+ + r+g+ t+++ vC++eg++++ ++ ++ +r+r+++rtgC+a++ k + ++v+++ + XP_019158027.1 29 EFYNHYAAKVEFDTRSSSVVTA-RDGTKTQKQIVCNREGFKNTGAQHcqsqssadagegPSRPKRRRVSNRTGCRARIIFKYIGAAGYQVATFIE 122 6************9998887.8888***********999999999*999889999************************** PP FAR1 84 eHnHela 90 +HnH+++ XP_019158027.1 123 KHNHSMS 129 **986 PP

Sequence ? help Back to Top
Protein Sequence Length: 692 aa Download sequence
MTQYWTPHCE DEIRPAVNMI FKTLDAGIEF YNHYAAKVEF DTRSSSVVTA RDGTKTQKQI 60 VCNREGFKNT GAQHCQSQSS ADAGEGPSRP KRRRVSNRTG CRARIIFKYI GAAGYQVATF 120 IEKHNHSMSS ILARQFLKGN RNISSVHQKF ILDCAKANIG ASKSHGLYSH IVRDYSEVGA 180 TVADFKNVRR DLRAYILGAD AQILVHNLIK KQEMCPAFAF DYEVDEDEQM SRLFCADPMS 240 KKNFAAFGDV VSFDATYSTN RYNMAMGMEP RIIVTDQDPA MKVAIPTVFK QARHRYCMWH 300 IMCKVGEKVG PTLNKDEEFR NKLNSIVWTS SLEPPDFEKQ WRELMEKYNL VEHNWFTTMF 360 EARNHWIPAY FRDVFMGGLL RTTSRSKSEN YTYSRFTGPQ SSLVEFMMNF DSALKSQRNT 420 NAKLNSDNEG YNPDMKTPLG IEKHASIVYT ITVFYQVQEE ICASCFKCMV LSVREDGGML 480 HYDIMDGKNK RFTVVHNVND HEAKCSCKMF EMVGLLCRHI FVVFRDLEKI PLKYVVNRWT 540 KDASLKATFE IDGVIYDQNG PKDEKKMLLN KVWSDIHCCM DLAGSNMERF AAFSQVINEQ 600 KQLEKLSPQH SRRTVIESYC GSTEISEINI LPSKHAKNKG SGKRIKSSKE LAMEKEEGRR 660 CNFCGVRGDH YDTRTCPLNP KNKDKQKGKK KA

Sequence ? help Back to Top

Protein Sequence Length: 692 aa Download sequence

MTQYWTPHCE DEIRPAVNMI FKTLDAGIEF YNHYAAKVEF DTRSSSVVTA RDGTKTQKQI  60
VCNREGFKNT GAQHCQSQSS ADAGEGPSRP KRRRVSNRTG CRARIIFKYI GAAGYQVATF  120
IEKHNHSMSS ILARQFLKGN RNISSVHQKF ILDCAKANIG ASKSHGLYSH IVRDYSEVGA  180
TVADFKNVRR DLRAYILGAD AQILVHNLIK KQEMCPAFAF DYEVDEDEQM SRLFCADPMS  240
KKNFAAFGDV VSFDATYSTN RYNMAMGMEP RIIVTDQDPA MKVAIPTVFK QARHRYCMWH  300
IMCKVGEKVG PTLNKDEEFR NKLNSIVWTS SLEPPDFEKQ WRELMEKYNL VEHNWFTTMF  360
EARNHWIPAY FRDVFMGGLL RTTSRSKSEN YTYSRFTGPQ SSLVEFMMNF DSALKSQRNT  420
NAKLNSDNEG YNPDMKTPLG IEKHASIVYT ITVFYQVQEE ICASCFKCMV LSVREDGGML  480
HYDIMDGKNK RFTVVHNVND HEAKCSCKMF EMVGLLCRHI FVVFRDLEKI PLKYVVNRWT  540
KDASLKATFE IDGVIYDQNG PKDEKKMLLN KVWSDIHCCM DLAGSNMERF AAFSQVINEQ  600
KQLEKLSPQH SRRTVIESYC GSTEISEINI LPSKHAKNKG SGKRIKSSKE LAMEKEEGRR  660
CNFCGVRGDH YDTRTCPLNP KNKDKQKGKK KA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	91	95	KRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-81	FAR1 family protein