PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019157864.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 452aa    MW: 51286.8 Da    PI: 7.2644
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019157864.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS449.22.7e-137694491374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lLl+cA++v++g l  a+ +L ++s+laspdgd+mqR+a+yf+eALa r++r++++lykal++++ +    s++++a k++++++P+lk+++
  XP_019157864.1  69 LIHLLLTCANHVAAGALDSANVALDQISHLASPDGDTMQRIASYFAEALADRILRTWPGLYKALHSTRLP--ALSDQVKAKKMLYDLFPFLKVAF 161
                     689*************************************************************988887..599******************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +++NqaI ea+ege+ vHiiD+++ +++QW +Llq L++Rpegpp+lRiTgv++    ++e l +t++ L++ Ae+l++pf+f++ ++++le+l+
  XP_019157864.1 162 MVTNQAIIEAMEGEKLVHIIDLNAAEPTQWRPLLQDLSARPEGPPHLRITGVHP----HREVLDQTARALTDEAEKLDIPFQFTP-IVTNLETLD 251
                     ******************************************************....9**************************.7999***** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrll..............desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                     +++Lrvk+gEala+ ++l+lh+ll              d+    +++++ +L+++++lsPk+++++eqe++hn+e+++er++e+l+yy+alfd+l
  XP_019157864.1 252 FRQLRVKTGEALAITSSLKLHTLLahndepgknpqrpgDHYFLENHKIKGFLDALRGLSPKILIISEQESNHNGEKLMERLSESLHYYAALFDCL 346
                     **********************************9996444444447888********************************************* PP

            GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrp 366
                     e++lpr+s+er k E+++lg+ei+n++aceg er+erhe+lekW  rl+++GF +v+ls++a+ qa++ l+ +  dgy+v+ee+g++v++W+dr+
  XP_019157864.1 347 ESTLPRTSSERLKAEKMVLGEEIKNIIACEGMERKERHEKLEKWFWRLGSSGFWNVALSYYAMLQARRYLQSCRCDGYNVKEENGCVVICWQDRA 441
                     *********************************************************************************************** PP

            GRAS 367 LvsvSaWr 374
                     L+svS+Wr
  XP_019157864.1 442 LFSVSCWR 449
                     *******8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    
MSSFSFHLTQ NSSASLSLYL HCKQLTMFQD NNDGSSSITS LSPRMAAGGF GSLCHWFKEL  60
KPEERGLYLI HLLLTCANHV AAGALDSANV ALDQISHLAS PDGDTMQRIA SYFAEALADR  120
ILRTWPGLYK ALHSTRLPAL SDQVKAKKML YDLFPFLKVA FMVTNQAIIE AMEGEKLVHI  180
IDLNAAEPTQ WRPLLQDLSA RPEGPPHLRI TGVHPHREVL DQTARALTDE AEKLDIPFQF  240
TPIVTNLETL DFRQLRVKTG EALAITSSLK LHTLLAHNDE PGKNPQRPGD HYFLENHKIK  300
GFLDALRGLS PKILIISEQE SNHNGEKLME RLSESLHYYA ALFDCLESTL PRTSSERLKA  360
EKMVLGEEIK NIIACEGMER KERHEKLEKW FWRLGSSGFW NVALSYYAML QARRYLQSCR  420
CDGYNVKEEN GCVVICWQDR ALFSVSCWRC RR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0GRAS family protein