PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019157840.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NF-YA
Protein Properties Length: 266aa    MW: 28865.9 Da    PI: 8.9259
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019157840.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA1041.3e-32162218158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep+YVNaKQy++Il+RR++Rak+e++kkl +k rkpylheSRh+hAl+R+Rg+gGrF
  XP_019157840.1 162 QEPVYVNAKQYHGILRRRESRAKAESQKKL-IKVRKPYLHESRHQHALKRARGTGGRF 218
                     69****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    
MQSKSETANR VEAHSYDLPR SAAYADPWWT AAGCNPINPR SKRASVSDSS SLEQSVDDQS  60
QSDGDDDTAK KSQNSAPSDQ DGNYGQVDQS LQHAKSTMSA RTDESLIQPP QLELVGHSIA  120
CTPNLYTDPY FMGMMASYGQ PLVPQFLDMQ QARMPLPLEM TQEPVYVNAK QYHGILRRRE  180
SRAKAESQKK LIKVRKPYLH ESRHQHALKR ARGTGGRFAK KSETAASKET GSGAAADPQL  240
PSINGGSSYY VGGSSGGRGS IATNAA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.27e-53NF-YA family protein