PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019157784.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family LBD
Protein Properties Length: 167aa    MW: 18156.3 Da    PI: 7.9252
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019157784.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260144.72.7e-45151141100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrr+CakdCv+apyfpa++p+kfa vhk+FGasnv kll++lpe++r da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+++la
  XP_019157784.1  15 PCAACKLLRRRCAKDCVFAPYFPADEPHKFASVHKVFGASNVNKLLQDLPEHQRGDAVSSMVYEANARMRDPVYGCVGAISSLQQQVDVLQTQLA 109
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                      +++e
  XP_019157784.1 110 FTQAE 114
                     99876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    
MKESWRKAGG AAASPCAACK LLRRRCAKDC VFAPYFPADE PHKFASVHKV FGASNVNKLL  60
QDLPEHQRGD AVSSMVYEAN ARMRDPVYGC VGAISSLQQQ VDVLQTQLAF TQAEVVHMRM  120
RQPFSSSNSP ENASPSSSRH AHTTHGGADP FGTDMAVDQS NAGDSFW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.12e-52LBD family protein