PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019157706.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 368aa MW: 41330.4 Da PI: 6.5416

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019157706.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.7	8.6e-05	201	220	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ XP_019157706.1 201 FSCPLCFKTFNRYNNMQMHM 220 89*****************9 PP
2	zf-C2H2	14.5	0.00011	285	307	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ XP_019157706.1 285 FMCRKCGKAFAVRGDWRTHEKNC 307 89*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence
MSDPYTNYNY FHGCFNNFNP FHHHPPSSSS SSSPPSSFHS YNYNFQFPPP SPPLKQALPL 60 LSLSPTRPAQ QDSSSSFSAM EVDDVSAKNQ EDSGFVSNYG EGDEEGEESD VSVALHLGLP 120 GDADLISRLS SYSNSEDNNN NNINNKVEDQ EVSVVGTNHH QYWCSSSSSS SSSSSPSTST 180 LHKGQYWIPT PAQILIGPTQ FSCPLCFKTF NRYNNMQMHM WGHGSQYRKG PESLRGTQPT 240 AMLRLPCYCC AAGCRNNIDH PRAKPLKDFR TLQTHYKRKH GIKPFMCRKC GKAFAVRGDW 300 RTHEKNCGKL WYCTCGSDFK HKRSLKDHIK AFGDAHAAYA IDCFDEEDEP ASEIEQDNEH 360 DEDQINQP

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence

MSDPYTNYNY FHGCFNNFNP FHHHPPSSSS SSSPPSSFHS YNYNFQFPPP SPPLKQALPL  60
LSLSPTRPAQ QDSSSSFSAM EVDDVSAKNQ EDSGFVSNYG EGDEEGEESD VSVALHLGLP  120
GDADLISRLS SYSNSEDNNN NNINNKVEDQ EVSVVGTNHH QYWCSSSSSS SSSSSPSTST  180
LHKGQYWIPT PAQILIGPTQ FSCPLCFKTF NRYNNMQMHM WGHGSQYRKG PESLRGTQPT  240
AMLRLPCYCC AAGCRNNIDH PRAKPLKDFR TLQTHYKRKH GIKPFMCRKC GKAFAVRGDW  300
RTHEKNCGKL WYCTCGSDFK HKRSLKDHIK AFGDAHAAYA IDCFDEEDEP ASEIEQDNEH  360
DEDQINQP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-127	C2H2 family protein