PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_019157592.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 243aa MW: 27421.4 Da PI: 10.3708 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 45.4 | 1e-14 | 11 | 50 | 3 | 42 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i n+s+r+ ++ kR+ g+ KK +EL vLCda++a+i++ss XP_019157592.1 11 IVNQSKRKASYQKRKRGVVKKLNELTVLCDADAAMIMYSS 50 78************************************98 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 243 aa Download sequence |
MARRRLRLAY IVNQSKRKAS YQKRKRGVVK KLNELTVLCD ADAAMIMYSS FEQGPVIWPT 60 GERVQELIAR FMQLLDVQQT RRMMSQNSFV AERLEKLGTL LLKLKRENRE KDMNALMHKI 120 FRREQIIDYL SSVELNDLGW VLNTNIVESV MRFERDSPTP APFFPAAPSL ATASPPVLGS 180 GTSNVVAPAN VFSGQSYQGT VGIQTPMSAN LNPGTPWSYH NWAFMNDSNQ NDPTQGRPGP 240 STQ |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 17 | 32 | RKASYQKRKRGVVKKL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G05860.2 | 4e-25 | M-type_MADS family protein |